8GET

R. hominis 2 beta-glucuronidase bound to norquetiapine-glucuronide

PDB DOI: https://doi.org/10.2210/pdb8GET/pdb

Classification: HYDROLASE
Organism(s): Roseburia hominis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-07 Released: 2024-03-20
Deposition Author(s): Simpson, J.B., Redinbo, M.R.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.269
R-Value Work: 0.224
R-Value Observed: 0.225

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Diverse Human Therapeutics Impact Hormone and Neurotransmitter Homeostasis by Inhibiting Gut Microbial Enzymes

Simpson, J.B., Redinbo, M.R.

To be published.

Macromolecule Content

Total Structure Weight: 347.28 kDa
Atom Count: 20,670
Modelled Residue Count: 2,565
Deposited Residue Count: 3,028
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
beta-galactosidase	A, B, C, D	757	Roseburia hominis	Mutation(s): 0 Gene Names: DWX93_05255
UniProt
Find proteins for A0A395V8I7 (Roseburia hominis) Explore A0A395V8I7 Go to UniProtKB: A0A395V8I7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A395V8I7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZG5 Query on ZG5 Download Ideal Coordinates CCD File SDF format, chain M [auth C] MOL2 format, chain M [auth C]	M [auth C]	11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)dibenzo[b,f][1,4]thiazepine C₂₃ H₂₅ N₃ O₆ S UKCFGNFADWVWOZ-SXFAUFNYSA-N		Interactions Focus chain M [auth C] Interactions & Density Focus chain M [auth C]
FMN Query on FMN Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain L [auth B] SDF format, chain P [auth C] MOL2 format, chain G [auth A] MOL2 format, chain L [auth B] MOL2 format, chain P [auth C]	G [auth A], L [auth B], P [auth C]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain G [auth A] Focus chain L [auth B] Focus chain P [auth C] Interactions & Density Focus chain G [auth A] Focus chain L [auth B] Focus chain P [auth C]
BDP Query on BDP Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth B] SDF format, chain Q [auth D] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B] MOL2 format, chain Q [auth D]	F [auth A], K [auth B], Q [auth D]	beta-D-glucopyranuronic acid C₆ H₁₀ O₇ AEMOLEFTQBMNLQ-QIUUJYRFSA-N		Interactions Focus chain F [auth A] Focus chain K [auth B] Focus chain Q [auth D] Interactions & Density Focus chain F [auth A] Focus chain K [auth B] Focus chain Q [auth D]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain N [auth C] SDF format, chain O [auth C] SDF format, chain R [auth D] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain N [auth C] MOL2 format, chain O [auth C] MOL2 format, chain R [auth D]	E [auth A] H [auth B] I [auth B] J [auth B] N [auth C] E [auth A], H [auth B], I [auth B], J [auth B], N [auth C], O [auth C], R [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth B] Focus chain N [auth C] Focus chain O [auth C] Focus chain R [auth D] Interactions & Density Focus chain E [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth B] Focus chain N [auth C] Focus chain O [auth C] Focus chain R [auth D]