8GES

R. hominis 2 beta-glucuronidase bound to UNC10201652-glucuronide

PDB DOI: https://doi.org/10.2210/pdb8GES/pdb

Classification: HYDROLASE
Organism(s): Roseburia hominis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-07 Released: 2024-02-14
Deposition Author(s): Simpson, J.B., Redinbo, M.R.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.282
R-Value Work: 0.231
R-Value Observed: 0.232

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Diverse Human Therapeutics Impact Hormone and Neurotransmitter Homeostasis by Inhibiting Gut Microbial Enzymes

Simpson, J.B., Redinbo, M.R.

To be published.

Macromolecule Content

Total Structure Weight: 347.88 kDa
Atom Count: 20,861
Modelled Residue Count: 2,560
Deposited Residue Count: 3,024
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
beta-galactosidase	A, B [auth D], C, D [auth B]	756	Roseburia hominis	Mutation(s): 0 Gene Names: DWX93_05255
UniProt
Find proteins for A0A395V8I7 (Roseburia hominis) Explore A0A395V8I7 Go to UniProtKB: A0A395V8I7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A395V8I7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
I9G (Subject of Investigation/LOI) Query on I9G Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth D] SDF format, chain M [auth C] SDF format, chain P [auth B] MOL2 format, chain I [auth A] MOL2 format, chain J [auth D] MOL2 format, chain M [auth C] MOL2 format, chain P [auth B]	I [auth A], J [auth D], M [auth C], P [auth B]	8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(morpholin-4-yl)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3 -c]isoquinoline C₂₆ H₃₃ N₇ O₇ S AQRGEQSNANJABA-WFFUTXBBSA-N		Interactions Focus chain I [auth A] Focus chain J [auth D] Focus chain M [auth C] Focus chain P [auth B] Interactions & Density Focus chain I [auth A] Focus chain J [auth D] Focus chain M [auth C] Focus chain P [auth B]
FMN (Subject of Investigation/LOI) Query on FMN Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain K [auth C] SDF format, chain O [auth B] MOL2 format, chain E [auth A] MOL2 format, chain K [auth C] MOL2 format, chain O [auth B]	E [auth A], K [auth C], O [auth B]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain E [auth A] Focus chain K [auth C] Focus chain O [auth B] Interactions & Density Focus chain E [auth A] Focus chain K [auth C] Focus chain O [auth B]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain L [auth C] SDF format, chain N [auth B] SDF format, chain Q [auth B] SDF format, chain R [auth B] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain L [auth C] MOL2 format, chain N [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain R [auth B]	F [auth A] G [auth A] H [auth A] L [auth C] N [auth B] F [auth A], G [auth A], H [auth A], L [auth C], N [auth B], Q [auth B], R [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain L [auth C] Focus chain N [auth B] Focus chain Q [auth B] Focus chain R [auth B] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain L [auth C] Focus chain N [auth B] Focus chain Q [auth B] Focus chain R [auth B]