8GCI | pdb_00008gci

Crystal structure of C. elegans LIN-42 PAS-B domain

PDB DOI: https://doi.org/10.2210/pdb8GCI/pdb

Classification: GENE REGULATION
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-01 Released: 2023-03-15
Deposition Author(s): Spangler, B.K., Coronado, A.R., Tripathi, S.M., Ward, J.D., Partch, C.L.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free:
0.293 (Depositor), 0.296 (DCC)
R-Value Work:
0.263 (Depositor), 0.266 (DCC)
R-Value Observed:
0.266 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of C. elegans LIN-42 PAS-B domain

Spangler, B.K., Coronado, A.R., Tripathi, S.M., Ward, J.D., Partch, C.L.

To be published.

Macromolecule Content

Total Structure Weight: 31.19 kDa
Atom Count: 1,391
Modeled Residue Count: 169
Deposited Residue Count: 282
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Period protein homolog lin-42	A	282	Caenorhabditis elegans	Mutation(s): 0 Gene Names: lin-42, F47F6.1
UniProt
Find proteins for Q65ZG8 (Caenorhabditis elegans) Explore Q65ZG8 Go to UniProtKB: Q65ZG8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q65ZG8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free: 0.293 (Depositor), 0.296 (DCC)
R-Value Work: 0.263 (Depositor), 0.266 (DCC)
R-Value Observed: 0.266 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.733	α = 90
b = 105.907	β = 90
c = 152.966	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-03-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-03-15
Type: Initial release
Version 1.1: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.