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8GCI
|
pdb_00008gci
Crystal structure of C. elegans LIN-42 PAS-B domain
External Resource: Annotation
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
F_UNCLASSIFIED
e8gciA1
A: a+b three layers
X: Profilin-like
H: sensor domains (From Topology)
T: sensor domains
F: F_UNCLASSIFIED
ECOD (1.6)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF14598
PAS domain (PAS_11)
PAS domain
This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), which binds to an LXXLL motif in the C-terminal region of STAT6 (Signal transducer and activator of transcription 6) [1].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Period protein homolog lin-42
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
protein binding
binding
DNA-binding transcription factor binding
regulation of cellular process
negative regulation of biological process
negative regulation of miRNA transcription
RNA metabolic process
regulation of primary metabolic process
negative regulation of RNA biosynthetic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
DNA-templated transcription
nucleic acid biosynthetic process
regulation of RNA metabolic process
miRNA transcription
regulation of miRNA metabolic process
negative regulation of cellular process
regulation of cellular process
negative regulation of biological process
negative regulation of miRNA transcription
RNA metabolic process
regulation of primary metabolic process
negative regulation of RNA biosynthetic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
DNA-templated transcription
nucleic acid biosynthetic process
regulation of RNA metabolic process
miRNA transcription
regulation of miRNA metabolic process
negative regulation of cellular process
negative regulation of nucleobase-containing compound metabolic process
regulation of nucleobase-containing compound metabolic process
miRNA metabolic process
negative regulation of macromolecule metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
negative regulation of DNA-templated transcription
regulation of biological process
negative regulation of metabolic process
biological regulation
primary metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of gene expression
biosynthetic process
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
negative regulation of miRNA metabolic process
cellular process
metabolic process
regulation of macromolecule biosynthetic process
macromolecule metabolic process
regulation of DNA-templated transcription
regulation of metabolic process
negative regulation of RNA metabolic process
regulation of miRNA transcription
developmental process
regulation of development, heterochronic
regulation of developmental process
cellular developmental process
cell differentiation
dauer larval development
multicellular organismal process
regulation of multicellular organismal development
negative regulation of nematode larval development
negative regulation of developmental process
negative regulation of dauer larval development
nematode larval development
larval development
negative regulation of post-embryonic development
multicellular organism development
regulation of post-embryonic development
regulation of nematode larval development
regulation of dauer larval development
anatomical structure development
post-embryonic development
regulation of multicellular organismal process
negative regulation of multicellular organismal process
Less
cellular anatomical structure
intracellular anatomical structure
cytoplasm
membrane-bounded organelle
intracellular organelle
organelle
nucleus
intracellular membrane-bounded organelle
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR035965
PAS domain superfamily
Homologous Superfamily
A
IPR000014
PAS domain
Domain
A
IPR050760
Period circadian regulator
Family
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