8FH3

Human IFT-A complex structures provide molecular insights into ciliary transport


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Human IFT-A complex structures provide molecular insights into ciliary transport.

Jiang, M.Palicharla, V.R.Miller, D.Hwang, S.H.Zhu, H.Hixson, P.Mukhopadhyay, S.Sun, J.

(2023) Cell Res 33: 288-298

  • DOI: https://doi.org/10.1038/s41422-023-00778-3
  • Primary Citation of Related Structures:  
    8FGW, 8FH3

  • PubMed Abstract: 

    Intraflagellar transport (IFT) complexes, IFT-A and IFT-B, form bidirectional trains that move along the axonemal microtubules and are essential for assembling and maintaining cilia. Mutations in IFT subunits lead to numerous ciliopathies involving multiple tissues. However, how IFT complexes assemble and mediate cargo transport lacks mechanistic understanding due to missing high-resolution structural information of the holo-complexes. Here we report cryo-EM structures of human IFT-A complexes in the presence and absence of TULP3 at overall resolutions of 3.0-3.9 Å. IFT-A adopts a "lariat" shape with interconnected core and peripheral subunits linked by structurally vital zinc-binding domains. TULP3, the cargo adapter, interacts with IFT-A through its N-terminal region, and interface mutations disrupt cargo transport. We also determine the molecular impacts of disease mutations on complex formation and ciliary transport. Our work reveals IFT-A architecture, sheds light on ciliary transport and IFT train formation, and enables the rationalization of disease mutations in ciliopathies.


  • Organizational Affiliation

    Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
WD repeat-containing protein 351,181Homo sapiensMutation(s): 0 
Gene Names: WDR35IFT121KIAA1336
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P2L0 (Homo sapiens)
Explore Q9P2L0 
Go to UniProtKB:  Q9P2L0
PHAROS:  Q9P2L0
GTEx:  ENSG00000118965 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P2L0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 122 homolog1,241Homo sapiensMutation(s): 0 
Gene Names: IFT122SPGWDR10WDR140
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HBG6 (Homo sapiens)
Explore Q9HBG6 
Go to UniProtKB:  Q9HBG6
PHAROS:  Q9HBG6
GTEx:  ENSG00000163913 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HBG6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
WD repeat-containing protein 191,342Homo sapiensMutation(s): 0 
Gene Names: WDR19IFT144KIAA1638
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NEZ3 (Homo sapiens)
Explore Q8NEZ3 
Go to UniProtKB:  Q8NEZ3
PHAROS:  Q8NEZ3
GTEx:  ENSG00000157796 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NEZ3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 140 homologD [auth E]1,462Homo sapiensMutation(s): 0 
Gene Names: IFT140KIAA0590WDTC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RY7 (Homo sapiens)
Explore Q96RY7 
Go to UniProtKB:  Q96RY7
PHAROS:  Q96RY7
GTEx:  ENSG00000187535 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96RY7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tubby-related protein 3E [auth I]442Homo sapiensMutation(s): 0 
Gene Names: TULP3TUBL3
UniProt & NIH Common Fund Data Resources
Find proteins for O75386 (Homo sapiens)
Explore O75386 
Go to UniProtKB:  O75386
PHAROS:  O75386
GTEx:  ENSG00000078246 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75386
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR00HL143037

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-22
    Type: Initial release
  • Version 1.1: 2023-04-12
    Changes: Database references