8FGW

Human IFT-A complex structures provide molecular insights into ciliary transport


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Human IFT-A complex structures provide molecular insights into ciliary transport.

Jiang, M.Palicharla, V.R.Miller, D.Hwang, S.H.Zhu, H.Hixson, P.Mukhopadhyay, S.Sun, J.

(2023) Cell Res 33: 288-298

  • DOI: https://doi.org/10.1038/s41422-023-00778-3
  • Primary Citation of Related Structures:  
    8FGW, 8FH3

  • PubMed Abstract: 

    Intraflagellar transport (IFT) complexes, IFT-A and IFT-B, form bidirectional trains that move along the axonemal microtubules and are essential for assembling and maintaining cilia. Mutations in IFT subunits lead to numerous ciliopathies involving multiple tissues. However, how IFT complexes assemble and mediate cargo transport lacks mechanistic understanding due to missing high-resolution structural information of the holo-complexes. Here we report cryo-EM structures of human IFT-A complexes in the presence and absence of TULP3 at overall resolutions of 3.0-3.9 Å. IFT-A adopts a "lariat" shape with interconnected core and peripheral subunits linked by structurally vital zinc-binding domains. TULP3, the cargo adapter, interacts with IFT-A through its N-terminal region, and interface mutations disrupt cargo transport. We also determine the molecular impacts of disease mutations on complex formation and ciliary transport. Our work reveals IFT-A architecture, sheds light on ciliary transport and IFT train formation, and enables the rationalization of disease mutations in ciliopathies.


  • Organizational Affiliation

    Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
WD repeat-containing protein 351,181Homo sapiensMutation(s): 0 
Gene Names: WDR35IFT121KIAA1336
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Find proteins for Q9P2L0 (Homo sapiens)
Explore Q9P2L0 
Go to UniProtKB:  Q9P2L0
PHAROS:  Q9P2L0
GTEx:  ENSG00000118965 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P2L0
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 122 homolog1,241Homo sapiensMutation(s): 0 
Gene Names: IFT122SPGWDR10WDR140
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HBG6 (Homo sapiens)
Explore Q9HBG6 
Go to UniProtKB:  Q9HBG6
PHAROS:  Q9HBG6
GTEx:  ENSG00000163913 
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UniProt GroupQ9HBG6
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
WD repeat-containing protein 191,342Homo sapiensMutation(s): 0 
Gene Names: WDR19IFT144KIAA1638
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Find proteins for Q8NEZ3 (Homo sapiens)
Explore Q8NEZ3 
Go to UniProtKB:  Q8NEZ3
PHAROS:  Q8NEZ3
GTEx:  ENSG00000157796 
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UniProt GroupQ8NEZ3
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Tetratricopeptide repeat protein 21B1,316Homo sapiensMutation(s): 2 
Gene Names: TTC21BIFT139KIAA1992Nbla10696
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Find proteins for Q7Z4L5 (Homo sapiens)
Explore Q7Z4L5 
Go to UniProtKB:  Q7Z4L5
PHAROS:  Q7Z4L5
GTEx:  ENSG00000123607 
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UniProt GroupQ7Z4L5
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 140 homolog1,462Homo sapiensMutation(s): 0 
Gene Names: IFT140KIAA0590WDTC2
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Find proteins for Q96RY7 (Homo sapiens)
Explore Q96RY7 
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PHAROS:  Q96RY7
GTEx:  ENSG00000187535 
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UniProt GroupQ96RY7
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 43 homolog208Homo sapiensMutation(s): 0 
Gene Names: IFT43C14orf179
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Find proteins for Q96FT9 (Homo sapiens)
Explore Q96FT9 
Go to UniProtKB:  Q96FT9
PHAROS:  Q96FT9
GTEx:  ENSG00000119650 
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UniProt GroupQ96FT9
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR00HL143037

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-22
    Type: Initial release
  • Version 1.1: 2023-04-12
    Changes: Database references