8FFZ

TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation.

Talyzina, A.Han, Y.Banerjee, C.Fishbain, S.Reyes, A.Vafabakhsh, R.He, Y.

(2023) Mol Cell 83: 2641

  • DOI: https://doi.org/10.1016/j.molcel.2023.06.015
  • Primary Citation of Related Structures:  
    8FFZ

  • PubMed Abstract: 

    RNA polymerase III (Pol III) is responsible for transcribing 5S ribosomal RNA (5S rRNA), tRNAs, and other short non-coding RNAs. Its recruitment to the 5S rRNA promoter requires transcription factors TFIIIA, TFIIIC, and TFIIIB. Here, we use cryoelectron microscopy (cryo-EM) to visualize the S. cerevisiae complex of TFIIIA and TFIIIC bound to the promoter. Gene-specific factor TFIIIA interacts with DNA and acts as an adaptor for TFIIIC-promoter interactions. We also visualize DNA binding of TFIIIB subunits, Brf1 and TBP (TATA-box binding protein), which results in the full-length 5S rRNA gene wrapping around the complex. Our smFRET study reveals that the DNA within the complex undergoes both sharp bending and partial dissociation on a slow timescale, consistent with the model predicted from our cryo-EM results. Our findings provide new insights into the transcription initiation complex assembly on the 5S rRNA promoter and allow us to directly compare Pol III and Pol II transcription adaptations.


  • Organizational Affiliation

    Department of Molecular Biosciences, Northwestern University, Evanston, IL, USA; Interdisciplinary Biological Sciences Program, Northwestern University, Evanston, IL, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor IIIA451Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PZF1TFC2TFIIIAYPR186CP9677.9
UniProt
Find proteins for P39933 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P39933
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UniProt GroupP39933
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor tau 138 kDa subunit1,160Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TFC3TSV115YAL001CFUN24
UniProt
Find proteins for P34111 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP34111
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor tau 131 kDa subunit1,025Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TFC4PCF1YGR047C
UniProt
Find proteins for P33339 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP33339
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor tau 95 kDa subunit649Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TFC1YBR123CYBR0919
UniProt
Find proteins for P32367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP32367
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor tau 91 kDa subunit672Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TFC6YDR362C
UniProt
Find proteins for Q06339 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ06339
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor tau 60 kDa subunit588Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TFC8YPL007C
UniProt
Find proteins for Q12308 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor tau 55 kDa subunit435Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TFC7YOR110WO3234YOR3234w
UniProt
Find proteins for Q12415 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ12415
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor IIIB 70 kDa subunit,TATA-box-binding protein736Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: BRF1PCF4TDS4YGR246CSPT15BTF1TBP1YER148W
UniProt
Find proteins for P29056 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Find proteins for P13393 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupsP13393P29056
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Entity ID: 9
MoleculeChains LengthOrganismImage
DNA (151-MER)171Saccharomyces cerevisiae
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Entity ID: 10
MoleculeChains LengthOrganismImage
DNA (151-MER)171Saccharomyces cerevisiae
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTISOLDE

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--
American Cancer SocietyUnited States--
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-21
    Type: Initial release
  • Version 1.1: 2023-07-19
    Changes: Data collection, Database references
  • Version 1.2: 2023-08-16
    Changes: Data collection, Database references