8EZT | pdb_00008ezt

Crystal structure of HipB(Lp) from Legionella pneumophila

• PDB DOI: https://doi.org/10.2210/pdb8EZT/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Legionella pneumophila
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-11-01 Released: 2023-09-27 
• Deposition Author(s): Stogios, P.J., Skarina, T., Di Leo, R., Lin, J., Ensminger, A., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.06 Å
• R-Value Free: 
  0.343 (Depositor), 0.350 (DCC) 
• R-Value Work: 
  0.297 (Depositor), 0.300 (DCC) 
• R-Value Observed: 
  0.300 (Depositor) 

Literature

Crystal structure of HipB(Lp) from Legionella pneumophila

Stogios, P.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 34.71 kDa 
• Atom Count: 2,453 
• Modeled Residue Count: 280 
• Deposited Residue Count: 304 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HipB(Lp)	A, B, C, D	76	Legionella pneumophila	Mutation(s): 0  Gene Names: lpg2368
UniProt
Find proteins for Q5ZSZ8 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZSZ8  Go to UniProtKB:  Q5ZSZ8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	E [auth A], F [auth A], G [auth B], H [auth B], I [auth C], J [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.06 Å
• R-Value Free:  0.343 (Depositor), 0.350 (DCC) 
• R-Value Work:  0.297 (Depositor), 0.300 (DCC) 
• R-Value Observed: 0.300 (Depositor) 

Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.444	α = 90
b = 33.488	β = 102.73
c = 74.161	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing
PHENIX	model building
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-27 
Deposition Author(s): Stogios, P.J., Skarina, T., Di Leo, R., Lin, J., Ensminger, A., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201700060C

Revision History  

• Version 1.0: 2023-09-27
  Type: Initial release