8DY0

Crystal Structure of spFv GLK1 HL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

"Stapling" scFv for multispecific biotherapeutics of superior properties.

Boucher, L.E.Prinslow, E.G.Feldkamp, M.Yi, F.Nanjunda, R.Wu, S.J.Liu, T.Lacy, E.R.Jacobs, S.Kozlyuk, N.Del Rosario, B.Wu, B.Aquino, P.Davidson, R.C.Heyne, S.Mazzanti, N.Testa, J.Diem, M.D.Gorre, E.Mahan, A.Nanda, H.Gunawardena, H.P.Gervais, A.Armstrong, A.A.Teplyakov, A.Huang, C.Zwolak, A.Chowdhury, P.Cheung, W.C.Luo, J.

(2023) MAbs 15: 2195517-2195517

  • DOI: https://doi.org/10.1080/19420862.2023.2195517
  • Primary Citation of Related Structures:  
    8DY0, 8DY1, 8DY2, 8DY3, 8DY4, 8DY5

  • PubMed Abstract: 

    Single-chain fragment variable (scFv) domains play an important role in antibody-based therapeutic modalities, such as bispecifics, multispecifics and chimeric antigen receptor T cells or natural killer cells. However, scFv domains exhibit lower stability and increased risk of aggregation due to transient dissociation ("breathing") and inter-molecular reassociation of the two domains (VL and VH). We designed a novel strategy, referred to as stapling, that introduces two disulfide bonds between the scFv linker and the two variable domains to minimize scFv breathing. We named the resulting molecules stapled scFv (spFv). Stapling increased thermal stability (Tm) by an average of 10°C. In multiple scFv/spFv multispecifics, the spFv molecules display significantly improved stability, minimal aggregation and superior product quality. These spFv multispecifics retain binding affinity and functionality. Our stapling design was compatible with all antibody variable regions we evaluated and may be widely applicable to stabilize scFv molecules for designing biotherapeutics with superior biophysical properties.


  • Organizational Affiliation

    AbbVie, 1 North Waukegan Rd, North Chicago, IL, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
spFv GLK1 HL
A, B
252Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.94α = 76.35
b = 50.74β = 89.2
c = 63.2γ = 69.16
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-03
    Type: Initial release
  • Version 1.1: 2023-10-25
    Changes: Data collection, Refinement description