8DCS

Cryo-EM structure of cyanopindolol-bound beta1-adrenergic receptor in complex with heterotrimeric Gs-protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structures of beta 1 -adrenergic receptor in complex with Gs and ligands of different efficacies.

Su, M.Paknejad, N.Zhu, L.Wang, J.Do, H.N.Miao, Y.Liu, W.Hite, R.K.Huang, X.Y.

(2022) Nat Commun 13: 4095-4095

  • DOI: https://doi.org/10.1038/s41467-022-31823-1
  • Primary Citation of Related Structures:  
    8DCR, 8DCS

  • PubMed Abstract: 

    G-protein-coupled receptors (GPCRs) receive signals from ligands with different efficacies, and transduce to heterotrimeric G-proteins to generate different degrees of physiological responses. Previous studies revealed how ligands with different efficacies activate GPCRs. Here, we investigate how a GPCR activates G-proteins upon binding ligands with different efficacies. We report the cryo-EM structures of β 1 -adrenergic receptor (β 1 -AR) in complex with Gs (Gα s 1 2 ) and a partial agonist or a very weak partial agonist, and compare them to the β 1 -AR-Gs structure in complex with a full agonist. Analyses reveal similar overall complex architecture, with local conformational differences. Cellular functional studies with mutations of β 1 -AR residues show effects on the cellular signaling from β 1 -AR to the cAMP response initiated by the three different ligands, with residue-specific functional differences. Biochemical investigations uncover that the intermediate state complex comprising β 1 -AR and nucleotide-free Gs is more stable when binding a full agonist than a partial agonist. Molecular dynamics simulations support the local conformational flexibilities and different stabilities among the three complexes. These data provide insights into the ligand efficacy in the activation of GPCRs and G-proteins.


  • Organizational Affiliation

    Department of Physiology and Biophysics, Weill Cornell Medical College of Cornell University, New York, NY, 10065, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1A [auth B]339Bos taurusMutation(s): 0 
Gene Names: GNB1
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UniProt GroupP62871
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35B [auth N]140Lama glamaMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortC [auth A]384Bos taurusMutation(s): 0 
Gene Names: GNASGNAS1
Membrane Entity: Yes 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth G]71Bos taurusMutation(s): 1 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt
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UniProt GroupP63212
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Endolysin,Endolysin,Beta-1 adrenergic receptor chimeraE [auth R]508Meleagris gallopavoMutation(s): 0 
EC: 3.2.1.17
Membrane Entity: Yes 
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Find proteins for P00720 (Enterobacteria phage T4)
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UniProt GroupsP07700P00720
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
P32 (Subject of Investigation/LOI)
Query on P32

Download Ideal Coordinates CCD File 
F [auth R]4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile
C16 H21 N3 O2
CQEFAUFOQSCRMZ-LBPRGKRZSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM138676

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-27
    Type: Initial release