8D2J | pdb_00008d2j

A novel insecticidal protein from ferns IPD113_Cow.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.256 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.220 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.221 (Depositor) 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Novel insecticidal proteins from ferns resemble insecticidal proteins from Bacillus thuringiensis.

Wei, J.Z.Lum, A.Schepers, E.Liu, L.Weston, R.T.McGinness, B.S.Heckert, M.J.Xie, W.Kassa, A.Bruck, D.Rauscher, G.Kapka-Kitzman, D.Mathis, J.P.Zhao, J.Z.Sethi, A.Barry, J.Lu, A.L.Brugliera, F.Lee, E.L.van derWeerden, N.L.Eswar, N.Maher, M.J.Anderson, M.A.

(2023) Proc Natl Acad Sci U S A 120: e2306177120-e2306177120

  • DOI: https://doi.org/10.1073/pnas.2306177120
  • Primary Citation of Related Structures:  
    8D2J

  • PubMed Abstract: 

    Lepidopterans affect crop production worldwide. The use of transgenes encoding insecticidal proteins from Bacillus thuringiensis ( Bt ) in crop plants is a well-established technology that enhances protection against lepidopteran larvae. Concern about widespread field-evolved resistance to Bt proteins has highlighted an urgent need for new insecticidal proteins with different modes or sites of action. We discovered a new family of insecticidal proteins from ferns. The prototype protein from Pteris species (Order Polypodiales) and variants from two other orders of ferns, Schizaeales and Ophioglossales, were effective against important lepidopteran pests of maize and soybean in diet-based assays. Transgenic maize and soybean plants producing these proteins were more resistant to insect damage than controls. We report here the crystal structure of a variant of the prototype protein to 1.98 Å resolution. Remarkably, despite being derived from plants, the structure resembles the 3-domain Cry proteins from Bt but has only two out of three of their characteristic domains, lacking the C-terminal domain which is typically required for their activities. Two of the fern proteins were effective against strains of fall armyworm that were resistant to Bt 3-domain Cry proteins Cry1Fa or Cry2A.127. This therefore represents a novel family of insecticidal proteins that have the potential to provide future tools for pest control.


  • Organizational Affiliation
    • Corteva Agriscience, Johnston, IA 50131.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
IPD113_CowA [auth B],
B [auth A],
C,
D
512Leptochilus wrightiiMutation(s): 0 
UniProt
Find proteins for A0AAJ6N666 (Leptochilus wrightii)
Explore A0AAJ6N666 
Go to UniProtKB:  A0AAJ6N666
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AAJ6N666
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.256 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.220 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.221 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.641α = 97.92
b = 79.393β = 104.95
c = 108.548γ = 97.41
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-11-08 
  • Deposition Author(s): Maher, M.J.

Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaFT180100397

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-08
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Structure summary