Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 14.98 kDa 
• Atom Count: 1,161 
• Modelled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

 8CWE

20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose

• PDB DOI:  https://doi.org/10.2210/pdb8CWE/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2022-05-19 Released: 2022-06-22 
• Deposition Author(s): Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
• Funding Organization(s): National Science Foundation (NSF, United States), Department of Energy (DOE, United States)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free: 0.162 
• R-Value Work: 0.129 
• R-Value Observed: 0.131 

Literature

Mapping Protein Dynamics at High-Resolution with Temperature-Jump X-ray Crystallography

Wolff, A.M., Nango, E., Young, I.D., Brewster, A.S., Kubo, M., Nomura, T., Sugahara, M., Owada, S., Barad, B.A., Ito, K., Bhowmick, A., Carbajo, S., Hino, T., Holton, J.M., Im, D., O'Riordan, L.J., Tanaka, T., Tanaka, R., Sierra, R.G., Yumoto, F., Tono, K., Iwata, S., Sauter, N.K., Fraser, J.S., Thompson, M.C.

(2022) Biorxiv 

• DOI: https://doi.org/10.1101/2022.06.10.495662

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Chain Length	2D Diagram	Glycosylation
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose	B	2	N/A	N/A
Glycosylation Resources
GlyTouCan:  G05026ZL GlyCosmos:  G05026ZL GlyGen:  G05026ZL

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	E [auth A], F [auth A], G [auth A], H [auth A], I [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	C [auth A], D [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free: 0.162 
• R-Value Work: 0.129 
• R-Value Observed: 0.131 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.061	α = 90
b = 77.061	β = 90
c = 37.223	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
cctbx.xfel	data reduction
cxi.merge	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-22 
Deposition Author(s): Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.

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Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	1231306
Department of Energy (DOE, United States)	United States	DE-AC02-76SF00515

Revision History  

• Version 1.0: 2022-06-22
  Type: Initial release
  
• Version 2.0: 2023-01-25
  Changes: Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary