8CIH

Structure of FL CINP

  • Classification: REPLICATION
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2023-02-09 Released: 2024-02-21 
  • Deposition Author(s): Foglizzo, M., Zeqiraj, E.
  • Funding Organization(s): Medical Research Council (MRC, United Kingdom), Wellcome Trust, Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.211 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The SPATA5-SPATA5L1 ATPase complex directs replisome proteostasis to ensure genome integrity.

Krishnamoorthy, V.Foglizzo, M.Dilley, R.L.Wu, A.Datta, A.Dutta, P.Campbell, L.J.Degtjarik, O.Musgrove, L.J.Calabrese, A.N.Zeqiraj, E.Greenberg, R.A.

(2024) Cell 

  • DOI: https://doi.org/10.1016/j.cell.2024.03.002
  • Primary Citation of Related Structures:  
    8CIH, 8RHN

  • PubMed Abstract: 

    Ubiquitin-dependent unfolding of the CMG helicase by VCP/p97 is required to terminate DNA replication. Other replisome components are not processed in the same fashion, suggesting that additional mechanisms underlie replication protein turnover. Here, we identify replisome factor interactions with a protein complex composed of AAA+ ATPases SPATA5-SPATA5L1 together with heterodimeric partners C1orf109-CINP (55LCC). An integrative structural biology approach revealed a molecular architecture of SPATA5-SPATA5L1 N-terminal domains interacting with C1orf109-CINP to form a funnel-like structure above a cylindrically shaped ATPase motor. Deficiency in the 55LCC complex elicited ubiquitin-independent proteotoxicity, replication stress, and severe chromosome instability. 55LCC showed ATPase activity that was specifically enhanced by replication fork DNA and was coupled to cysteine protease-dependent cleavage of replisome substrates in response to replication fork damage. These findings define 55LCC-mediated proteostasis as critical for replication fork progression and genome stability and provide a rationale for pathogenic variants seen in associated human neurodevelopmental disorders.


  • Organizational Affiliation

    Department of Cancer Biology, Penn Center for Genome Integrity, Basser Center for BRCA, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6160, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclin-dependent kinase 2-interacting protein
A, B
214Homo sapiensMutation(s): 0 
Gene Names: CINP
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BW66 (Homo sapiens)
Explore Q9BW66 
Go to UniProtKB:  Q9BW66
PHAROS:  Q9BW66
GTEx:  ENSG00000100865 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BW66
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
C [auth B]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.211 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.722α = 90
b = 91.722β = 90
c = 134.368γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
STARANISOdata scaling
AutoProcessdata scaling
PHASERphasing
autoPROCdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/T029471/1
Wellcome TrustUnited Kingdom222531/Z/21/Z
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/L015056/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-21
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Database references
  • Version 1.2: 2024-04-10
    Changes: Database references