8C46

N-Carbamoyl-beta-Alanine Amidohydrolases from Rhizobium radiobacter MDC 8606


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.229 

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Literature

Structural and biochemical characterisation of the N-carbamoyl-beta-alanine amidohydrolase from Rhizobium radiobacter MDC 8606.

Paloyan, A.Sargsyan, A.Karapetyan, M.D.Hambardzumyan, A.Kocharov, S.Panosyan, H.Dyukova, K.Kinosyan, M.Krueger, A.Piergentili, C.Stanley, W.A.Djoko, K.Y.Basle, A.Marles-Wright, J.Antranikian, G.

(2023) FEBS J 290: 5566-5580

  • DOI: https://doi.org/10.1111/febs.16943
  • Primary Citation of Related Structures:  
    8C46

  • PubMed Abstract: 

    N-carbamoyl-β-alanine amidohydrolase (CβAA) constitutes one of the most important groups of industrially relevant enzymes used in the production of optically pure amino acids and derivatives. In this study, a CβAA-encoding gene from Rhizobium radiobacter strain MDC 8606 was cloned and overexpressed in Escherichia coli. The purified recombinant enzyme (RrCβAA) showed a specific activity of 14 U·mg -1 using N-carbamoyl-β-alanine as a substrate with an optimum activity at 55 °C and pH 8.0. In this work, we report also the first prokaryotic CβAA structure at a resolution of 2.0 Å. A discontinuous catalytic domain and a dimerisation domain attached through a flexible hinge region at the domain interface have been revealed. We identify key ligand binding residues, including a conserved glutamic acid (Glu131), histidine (H385) and arginine (Arg291). Our results allowed us to explain the preference of the enzyme for linear carbamoyl substrates, as large and branched carbamoyl substrates cannot fit in the active site of the enzyme. This work envisages the use of RrCβAA from R. radiobacter MDC 8606 for the industrial production of L-α-, L-β- and L-γ-amino acids. The structural analysis provides new insights on enzyme-substrate interaction, which shed light on engineering of CβAAs for high catalytic activity and broad substrate specificity.


  • Organizational Affiliation

    Scientific and Production Center "Armbiotechnology" of NAS RA, Yerevan, Armenia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
N-carbamoyl-beta-alanine amidohydrolase
A, B
409Agrobacterium tumefaciensMutation(s): 0 
UniProt
Find proteins for A0A8F7I7M8 (Rhizobium radiobacter)
Explore A0A8F7I7M8 
Go to UniProtKB:  A0A8F7I7M8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8F7I7M8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.229 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.231α = 90
b = 104.622β = 90
c = 145.372γ = 90
Software Package:
Software NamePurpose
xia2data reduction
DIALSdata reduction
Aimlessdata scaling
MoRDaphasing
MolProbitymodel building
BUCCANEERmodel building
Cootmodel building
BUSTERrefinement
REFMACrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-06
    Type: Initial release
  • Version 1.1: 2023-12-20
    Changes: Database references