8C46

N-Carbamoyl-beta-Alanine Amidohydrolases from Rhizobium radiobacter MDC 8606

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293.15	23 % (w/v) PEG1500 and 100 mM MMT pH 6.0

Crystal Properties
Matthews coefficient	Solvent content
2.29	46.31

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 53.231	α = 90
b = 104.622	β = 90
c = 145.372	γ = 90

Symmetry
Space Group	P 2 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-12-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91188	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	84.92	100	0.996	7.1	7		55817

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.05			0.786	1.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2	84.917	55651	2802	99.801	0.231	0.2287	0.2698	29.238

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.14			-0.448		0.588

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.663
r_dihedral_angle_3_deg	15.58
r_dihedral_angle_2_deg	12.167
r_dihedral_angle_1_deg	7.757
r_lrange_it	5.012
r_lrange_other	4.993
r_scangle_it	3.483
r_scangle_other	3.483
r_mcangle_it	2.652
r_mcangle_other	2.651
r_scbond_it	2.512
r_scbond_other	2.512
r_mcbond_it	1.855
r_angle_refined_deg	1.851
r_mcbond_other	1.851
r_angle_other_deg	0.706
r_symmetry_nbd_refined	0.221
r_nbd_refined	0.199
r_nbd_other	0.192
r_xyhbond_nbd_refined	0.187
r_nbtor_refined	0.167
r_symmetry_nbd_other	0.166
r_symmetry_xyhbond_nbd_refined	0.1
r_chiral_restr	0.093
r_ncsr_local_group_1	0.087
r_symmetry_nbtor_other	0.079
r_metal_ion_refined	0.04
r_bond_refined_d	0.013
r_gen_planes_refined	0.011
r_bond_other_d	0.003
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6196
Nucleic Acid Atoms
Solvent Atoms	362
Heterogen Atoms	28

Software

Software
Software Name	Purpose
xia2	data reduction
DIALS	data reduction
Aimless	data scaling
MoRDa	phasing
MolProbity	model building
BUCCANEER	model building
Coot	model building
BUSTER	refinement
REFMAC	refinement