8BV8 | pdb_00008bv8

Crystal structure of the phage Mu protein Mom inactive mutant S124A

PDB DOI: https://doi.org/10.2210/pdb8BV8/pdb

Classification: VIRAL PROTEIN
Organism(s): Escherichia phage Mu
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2022-12-08 Released: 2023-12-20
Deposition Author(s): Silva, R.M.B., Slyvka, A., Lee, Y.J., Guan, C., Lund, S.R., Raleigh, E.A., Skowronek, K., Bochtler, M., Weigele, P.R.
Funding Organization(s): Foundation for Polish Science, Polish National Science Centre, Other government, Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free:
0.245 (Depositor), 0.245 (DCC)
R-Value Work:
0.215 (Depositor), 0.215 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the phage Mu protein Mom catalytic mutant S124A

Silva, R.M.B., Slyvka, A., Lee, Y.J., Guan, C., Lund, S.R., Raleigh, E.A., Skowronek, K., Bochtler, M., Weigele, P.R.

To be published.

Macromolecule Content

Total Structure Weight: 54.51 kDa
Atom Count: 3,739
Modeled Residue Count: 424
Deposited Residue Count: 464
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Methylcarbamoylase mom	A, B	232	Escherichia phage Mu	Mutation(s): 1 Gene Names: mom, Mup55
UniProt
Find proteins for P06018 (Escherichia phage Mu) Explore P06018 Go to UniProtKB: P06018
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P06018
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free: 0.245 (Depositor), 0.245 (DCC)
R-Value Work: 0.215 (Depositor), 0.215 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.18	α = 90
b = 66.48	β = 90
c = 138.39	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
PHENIX	phasing
Coot	model building
PHENIX	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-12-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Foundation for Polish Science	Poland	POIR.04.04.00-00-5D81/17-00
Polish National Science Centre	Poland	2018/30/Q/NZ2/00669
Other government		Polish National Agency for Academic Exchange PPI/APM/2018/1/00034
Other private		New England Biolabs

Revision History (Full details and data files)

Version 1.0: 2023-12-20
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.