8AQF

CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND LEI-515

• PDB DOI: https://doi.org/10.2210/pdb8AQF/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-08-12 Released: 2023-08-23 
• Deposition Author(s): Jiang, M., Huizenga, M., Wirt, J., Paloczi, J., Amedi, A., van der Berg, R., Benz, J., Collin, L., Deng, H., Driever, W., Florea, B., Grether, U., Janssen, A., Heitman, L., Lam, T.W., Mohr, F., Pavlovic, A., Ruf, I., Rutjes, H., Stevens, F., van der Vliet, D., van der Wel, T., Wittwer, M., Boeckel, C., Pacher, P., Hohmann, A., van der Stelt, M.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.178 
• R-Value Work: 0.154 

Literature

Discovery of a peripheral restricted, reversible monoacylglycerol lipase inhibitor that reduces liver injury and chemotherapy-induced neuropathy

Jiang, M., van der Stelt, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 36 kDa 
• Atom Count: 2,654 
• Modelled Residue Count: 289 
• Deposited Residue Count: 323 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoglyceride lipase	A	323	Homo sapiens	Mutation(s): 3  Gene Names: MGLL EC: 3.1.1.23
UniProt & NIH Common Fund Data Resources
Find proteins for Q99685 (Homo sapiens) Explore Q99685  Go to UniProtKB:  Q99685
PHAROS:  Q99685 GTEx:  ENSG00000074416

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NUX (Subject of Investigation/LOI)	B [auth A]	1-[(~{R})-[2-chloranyl-4-[(2~{S},3~{S})-4-(3-chlorophenyl)-2,3-dimethyl-piperazin-1-yl]carbonyl-phenyl]sulfinyl]-3,3-bis(fluoranyl)pentan-2-one C24 H26 Cl2 F2 N2 O3 S WYHRZGBTLDYJGW-GLVLYPABSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.178 
• R-Value Work: 0.154 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.625	α = 90
b = 127.568	β = 90
c = 60.358	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SADABS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-08-23 
Deposition Author(s): Jiang, M., Huizenga, M., Wirt, J., Paloczi, J., Amedi, A., van der Berg, R., Benz, J., Collin, L., Deng, H., Driever, W., Florea, B., Grether, U., Janssen, A., Heitman, L., Lam, T.W., Mohr, F., Pavlovic, A., Ruf, I., Rutjes, H., Stevens, F., van der Vliet, D., van der Wel, T., Wittwer, M., Boeckel, C., Pacher, P., Hohmann, A., van der Stelt, M.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-08-23
  Type: Initial release