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CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND LEI-515
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PE6 3PE6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MES pH 6.5, 6 to 13% PEG MME5K, 12% isopropanol
Crystal Properties Matthews coefficient Solvent content 2.49 50.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.625 α = 90 b = 127.568 β = 90 c = 60.358 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00009 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 45.81 99.6 0.0631 0.9985 11.69 6.62 51415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.65 0.7885 0.5966
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3PE6 1.55 45.81 51370 2472 99.521 0.155 0.1544 0.1673 0.1781 0.1906 31.073
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.711 -2.048 -0.663
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.594 r_dihedral_angle_4_deg 17.641 r_dihedral_angle_3_deg 14.443 r_lrange_it 6.965 r_lrange_other 6.687 r_dihedral_angle_1_deg 6.378 r_scangle_it 4.304 r_scangle_other 4.303 r_scbond_it 2.786 r_scbond_other 2.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.594 r_dihedral_angle_4_deg 17.641 r_dihedral_angle_3_deg 14.443 r_lrange_it 6.965 r_lrange_other 6.687 r_dihedral_angle_1_deg 6.378 r_scangle_it 4.304 r_scangle_other 4.303 r_scbond_it 2.786 r_scbond_other 2.785 r_mcangle_other 2.638 r_mcangle_it 2.637 r_angle_refined_deg 2.019 r_mcbond_it 1.875 r_mcbond_other 1.872 r_angle_other_deg 1.53 r_symmetry_nbd_refined 0.359 r_symmetry_xyhbond_nbd_refined 0.253 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.198 r_symmetry_nbd_other 0.182 r_nbtor_refined 0.176 r_nbd_other 0.169 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2238 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing