8AGF | pdb_00008agf

Crystal structure of human Thiosulfate sulfurtransferase amino acids 2-297

• PDB DOI: https://doi.org/10.2210/pdb8AGF/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-07-19 Released: 2022-09-14 
• Deposition Author(s): Goor, H.v., Grove, M.R., AL-Dahmani, Z.m.
• Funding Organization(s): Dutch Kidney Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.40 Å
• R-Value Free: 
  0.278 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.196 (Depositor), 0.200 (DCC) 

Starting Model: experimental

Literature

The crystal structure of human Thiosulfate sulfurtransferase

ALDahmani, Z., Groves, M., Goor, H., Wang, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 32.65 kDa 
• Atom Count: 2,302 
• Modeled Residue Count: 290 
• Deposited Residue Count: 290 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiosulfate sulfurtransferase	A	290	Homo sapiens	Mutation(s): 0  Gene Names: TST EC: 2.8.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q16762 (Homo sapiens) Explore Q16762  Go to UniProtKB:  Q16762
PHAROS:  Q16762 GTEx:  ENSG00000128311

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.40 Å
• R-Value Free:  0.278 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.196 (Depositor), 0.200 (DCC) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.93	α = 90
b = 48.543	β = 96.369
c = 152.501	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-09-14 
Deposition Author(s): Goor, H.v., Grove, M.R., AL-Dahmani, Z.m.

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Funding Organization	Location	Grant Number
Dutch Kidney Foundation	Netherlands	--

Revision History  

• Version 1.0: 2022-09-14
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description