8AGF

Crystal structure of human Thiosulfate sulfurtransferase amino acids 2-297

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	291.15	PEG 6000, Tris, calcium chloride dihydrate

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.45

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 41.93	α = 90
b = 48.543	β = 96.369
c = 152.501	γ = 90

Symmetry
Space Group	I 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	291	PIXEL	DECTRIS PILATUS 6M		2022-03-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.033200	PETRA III, DESY	P11

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.4	46.272	98.9	0.599	0.705	0.368	0.878	6.2	6.8		4269

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	9	46.23			0.118	0.138	0.071	0.992		6.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1BOH	3.4	46.272	4267	226	98.522	0.2	0.1956	0.2781	25.817

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.789		-0.006	2.08		0.693

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.492
r_dihedral_angle_3_deg	21.822
r_dihedral_angle_4_deg	18.647
r_dihedral_angle_1_deg	8.232
r_angle_refined_deg	1.576
r_lrange_it	1.439
r_lrange_other	1.438
r_angle_other_deg	1.16
r_mcangle_other	0.677
r_mcangle_it	0.676
r_scangle_it	0.557
r_scangle_other	0.557
r_mcbond_it	0.376
r_mcbond_other	0.366
r_scbond_it	0.299
r_scbond_other	0.299
r_symmetry_nbd_refined	0.287
r_nbd_other	0.285
r_nbd_refined	0.241
r_xyhbond_nbd_refined	0.216
r_symmetry_nbd_other	0.203
r_nbtor_refined	0.179
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.058
r_symmetry_xyhbond_nbd_refined	0.057
r_symmetry_xyhbond_nbd_other	0.056
r_bond_refined_d	0.007
r_gen_planes_refined	0.006
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2302
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing