7ZVW

NuA4 Histone Acetyltransferase Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The structure of the NuA4-Tip60 complex reveals the mechanism and importance of long-range chromatin modification.

Frechard, A.Faux, C.Hexnerova, R.Crucifix, C.Papai, G.Smirnova, E.McKeon, C.Ping, F.L.Y.Helmlinger, D.Schultz, P.Ben-Shem, A.

(2023) Nat Struct Mol Biol 30: 1337-1345

  • DOI: https://doi.org/10.1038/s41594-023-01056-x
  • Primary Citation of Related Structures:  
    7ZVW

  • PubMed Abstract: 

    Histone acetylation regulates most DNA transactions and is dynamically controlled by highly conserved enzymes. The only essential histone acetyltransferase (HAT) in yeast, Esa1, is part of the 1-MDa NuA4 complex, which plays pivotal roles in both transcription and DNA-damage repair. NuA4 has the unique capacity to acetylate histone targets located several nucleosomes away from its recruitment site. Neither the molecular mechanism of this activity nor its physiological importance are known. Here we report the structure of the Pichia pastoris NuA4 complex, with its core resolved at 3.4-Å resolution. Three subunits, Epl1, Eaf1 and Swc4, intertwine to form a stable platform that coordinates all other modules. The HAT module is firmly anchored into the core while retaining the ability to stretch out over a long distance. We provide structural, biochemical and genetic evidence that an unfolded linker region of the Epl1 subunit is critical for this long-range activity. Specifically, shortening the Epl1 linker causes severe growth defects and reduced H4 acetylation levels over broad chromatin regions in fission yeast. Our work lays the foundations for a mechanistic understanding of NuA4's regulatory role and elucidates how its essential long-range activity is attained.


  • Organizational Affiliation

    Institut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription-associated protein3,825Komagataella phaffii GS115Mutation(s): 0 
UniProt
Find proteins for C4QYV4 (Komagataella phaffii (strain GS115 / ATCC 20864))
Explore C4QYV4 
Go to UniProtKB:  C4QYV4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC4QYV4
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Actin376Komagataella phaffii GS115Mutation(s): 0 
UniProt
Find proteins for Q9P4D1 (Komagataella phaffii (strain GS115 / ATCC 20864))
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UniProt GroupQ9P4D1
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ActinC [auth G]468Komagataella phaffii GS115Mutation(s): 0 
UniProt
Find proteins for C4QXM9 (Komagataella phaffii (strain GS115 / ATCC 20864))
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UniProt GroupC4QXM9
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin modification-related protein EAF1D [auth E],
G [auth H]
1,051Komagataella phaffii GS115Mutation(s): 0 
UniProt
Find proteins for C4R7G0 (Komagataella phaffii (strain GS115 / ATCC 20864))
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UniProt GroupC4R7G0
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
SWR1-complex protein 4E [auth F]565Komagataella phaffii GS115Mutation(s): 0 
UniProt
Find proteins for C4R0G7 (Komagataella phaffii (strain GS115 / ATCC 20864))
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UniProt GroupC4R0G7
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Enhancer of polycomb-like proteinF [auth C]752Komagataella phaffii GS115Mutation(s): 0 
UniProt
Find proteins for C4R6V1 (Komagataella phaffii (strain GS115 / ATCC 20864))
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UniProt GroupC4R6V1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-17-CE12-0022

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-31
    Type: Initial release
  • Version 1.1: 2023-08-09
    Changes: Database references
  • Version 1.2: 2023-08-16
    Changes: Data collection, Database references
  • Version 1.3: 2023-09-20
    Changes: Database references