Download MendeleyCrystal structure of N-terminal catalytic domain of human PLAAT3
von Castelmur, E., Perrakis, A.To be published.
7ZOM
Crystal structure of N-terminal catalytic domain of human PLAAT3
- PDB DOI: https://doi.org/10.2210/pdb7ZOM/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-04-26 Released: 2023-04-26
- Funding Organization(s): Swiss National Science Foundation, Netherlands Organisation for Scientific Research (NWO)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.209
- R-Value Work: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phospholipase A and acyltransferase 3 | 132 | Homo sapiens | Mutation(s): 0 Gene Names: PLAAT3, HRASLS3, HREV107, PLA2G16 EC: 2.3.1 (PDB Primary Data), 3.1.1.32 (PDB Primary Data), 3.1.1.4 (PDB Primary Data) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P53816 (Homo sapiens) Explore P53816 Go to UniProtKB: P53816 | |||||
PHAROS: P53816 GTEx: ENSG00000176485 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P53816 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | B [auth A], C [auth A], D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.209
- R-Value Work: 0.185
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.638 | α = 90 |
| b = 60.638 | β = 90 |
| c = 74.069 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| SHARP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-04-26 Deposition Author(s): von Castelmur, E., Perrakis, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Swiss National Science Foundation | Switzerland | -- |
| Netherlands Organisation for Scientific Research (NWO) | Netherlands | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-04-26
Type: Initial release
