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Crystal structure of N-terminal catalytic domain of human PLAAT3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1M Hepes-NaOH pH7.0-7.5, 45-70% MPD
Crystal Properties Matthews coefficient Solvent content 2.65 53.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.638 α = 90 b = 60.638 β = 90 c = 74.069 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97632 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.84 99.7 0.033 0.039 0.021 21.4 6.4 21212
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 97.3 0.651 0.779 0.423 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIRAS FREE R-VALUE 1.601 42.84 21184 1038 99.671 0.186 0.1846 0.1846 0.2091 0.2092 38.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.056 0.528 1.056 -3.426
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.111 r_dihedral_angle_4_deg 16.212 r_scangle_it 11.664 r_dihedral_angle_3_deg 11.659 r_lrange_it 11.347 r_scbond_it 11.047 r_mcangle_it 6.221 r_dihedral_angle_1_deg 5.675 r_mcbond_it 5.464 r_angle_refined_deg 1.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.111 r_dihedral_angle_4_deg 16.212 r_scangle_it 11.664 r_dihedral_angle_3_deg 11.659 r_lrange_it 11.347 r_scbond_it 11.047 r_mcangle_it 6.221 r_dihedral_angle_1_deg 5.675 r_mcbond_it 5.464 r_angle_refined_deg 1.313 r_nbtor_refined 0.313 r_nbd_refined 0.23 r_symmetry_nbd_refined 0.186 r_xyhbond_nbd_refined 0.154 r_symmetry_xyhbond_nbd_refined 0.114 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 853 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHARP phasing