Experiment: 7ZOM

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	0.1M Hepes-NaOH pH7.0-7.5, 45-70% MPD

Crystal Properties
Matthews coefficient	Solvent content
2.65	53.61

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 60.638	α = 90
b = 60.638	β = 90
c = 74.069	γ = 120

Symmetry
Space Group	P 31 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2010-09-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.97632	ESRF	ID23-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	42.84	99.7	0.033	0.039	0.021	21.4	6.4		21212

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.6	1.63	97.3		0.651	0.779	0.423	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MIRAS	FREE R-VALUE	1.601	42.84	21184	1038	99.671	0.186	0.1846	0.18	0.2091	0.21	38.16

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.056	0.528		1.056		-3.426

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	25.111
r_dihedral_angle_4_deg	16.212
r_scangle_it	11.664
r_dihedral_angle_3_deg	11.659
r_lrange_it	11.347
r_scbond_it	11.047
r_mcangle_it	6.221
r_dihedral_angle_1_deg	5.675
r_mcbond_it	5.464
r_angle_refined_deg	1.313

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	25.111
r_dihedral_angle_4_deg	16.212
r_scangle_it	11.664
r_dihedral_angle_3_deg	11.659
r_lrange_it	11.347
r_scbond_it	11.047
r_mcangle_it	6.221
r_dihedral_angle_1_deg	5.675
r_mcbond_it	5.464
r_angle_refined_deg	1.313
r_nbtor_refined	0.313
r_nbd_refined	0.23
r_symmetry_nbd_refined	0.186
r_xyhbond_nbd_refined	0.154
r_symmetry_xyhbond_nbd_refined	0.114
r_chiral_restr	0.085
r_bond_refined_d	0.008
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	853
Nucleic Acid Atoms
Solvent Atoms	51
Heterogen Atoms	24

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
SHARP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.