7WLU

The Flattened Structure of mPIEZO1 in Lipid Bilayer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure deformation and curvature sensing of PIEZO1 in lipid membranes.

Yang, X.Lin, C.Chen, X.Li, S.Li, X.Xiao, B.

(2022) Nature 604: 377-383

  • DOI: https://doi.org/10.1038/s41586-022-04574-8
  • Primary Citation of Related Structures:  
    7WLT, 7WLU

  • PubMed Abstract: 

    PIEZO channels respond to piconewton-scale forces to mediate critical physiological and pathophysiological processes 1-5 . Detergent-solubilized PIEZO channels form bowl-shaped trimers comprising a central ion-conducting pore with an extracellular cap and three curved and non-planar blades with intracellular beams 6-10 , which may undergo force-induced deformation within lipid membranes 11 . However, the structures and mechanisms underlying the gating dynamics of PIEZO channels in lipid membranes remain unresolved. Here we determine the curved and flattened structures of PIEZO1 reconstituted in liposome vesicles, directly visualizing the substantial deformability of the PIEZO1-lipid bilayer system and an in-plane areal expansion of approximately 300 nm 2 in the flattened structure. The curved structure of PIEZO1 resembles the structure determined from detergent micelles, but has numerous bound phospholipids. By contrast, the flattened structure exhibits membrane tension-induced flattening of the blade, bending of the beam and detaching and rotating of the cap, which could collectively lead to gating of the ion-conducting pathway. On the basis of the measured in-plane membrane area expansion and stiffness constant of PIEZO1 (ref. 11 ), we calculate a half maximal activation tension of about 1.9 pN nm -1 , matching experimentally measured values. Thus, our studies provide a fundamental understanding of how the notable deformability and structural rearrangement of PIEZO1 achieve exquisite mechanosensitivity and unique curvature-based gating in lipid membranes.


  • Organizational Affiliation

    State Key Laboratory of Membrane Biology, Tsinghua-Peking Center for Life Sciences, IDG/McGovern Institute for Brain Research, School of Pharmaceutical Sciences, Beijing Frontier Research Center for Biological Structure, Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Piezo-type mechanosensitive ion channel component 1A,
B [auth C],
C [auth E]
2,547Mus musculusMutation(s): 0 
Gene Names: Piezo1Fam38a
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for E2JF22 (Mus musculus)
Explore E2JF22 
Go to UniProtKB:  E2JF22
IMPC:  MGI:3603204
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE2JF22
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLX (Subject of Investigation/LOI)
Query on PLX

Download Ideal Coordinates CCD File 
D [auth A],
E [auth C],
F [auth E]
(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL
C42 H89 N O8 P
YVNJQRQLQPWVSQ-IWSHAHEXSA-O
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentChina2016YFA0500402
National Natural Science Foundation of China (NSFC)China31825014
National Natural Science Foundation of China (NSFC)China32130049
National Natural Science Foundation of China (NSFC)China32021002
National Natural Science Foundation of China (NSFC)China31630090

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-13
    Type: Initial release
  • Version 1.1: 2022-04-20
    Changes: Database references
  • Version 1.2: 2022-04-27
    Changes: Database references
  • Version 1.3: 2022-07-06
    Changes: Structure summary