7PBX

Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("tight" conformation).

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Novel cryo-EM structure of an ADP-bound GroEL-GroES complex.

Kudryavtseva, S.S., Pichkur, E.B., Yaroshevich, I.A., Mamchur, A.A., Panina, I.S., Moiseenko, A.V., Sokolova, O.S., Muronetz, V.I., Stanishneva-Konovalova, T.B.

(2021) Sci Rep 11: 18241-18241

  • DOI: 10.1038/s41598-021-97657-x
  • Primary Citation of Related Structures:  
    7PBJ, 7PBX

  • PubMed Abstract: 

    • The GroEL-GroES chaperonin complex is a bacterial protein folding system, functioning in an ATP-dependent manner. Upon ATP binding and hydrolysis, it undergoes multiple stages linked to substrate protein binding, folding and release. Structural methods helped to reveal several conformational states and provide more information about the chaperonin functional cycle ...

    The GroEL-GroES chaperonin complex is a bacterial protein folding system, functioning in an ATP-dependent manner. Upon ATP binding and hydrolysis, it undergoes multiple stages linked to substrate protein binding, folding and release. Structural methods helped to reveal several conformational states and provide more information about the chaperonin functional cycle. Here, using cryo-EM we resolved two nucleotide-bound structures of the bullet-shaped GroEL-GroES 1 complex at 3.4 Å resolution. The main difference between them is the relative orientation of their apical domains. Both structures contain nucleotides in cis and trans GroEL rings; in contrast to previously reported bullet-shaped complexes where nucleotides were only present in the cis ring. Our results suggest that the bound nucleotides correspond to ADP, and that such a state appears at low ATP:ADP ratios.

    Organizational Affiliation: 

    Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia. stanishneva-konovalova@mail.bio.msu.ru.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
60 kDa chaperonin524Escherichia coli K-12Mutation(s): 0 
Gene Names: groL, groEL, mopA, b4143, JW4103
UniProt
Find proteins for P0A6F5 (Escherichia coli (strain K12))
Explore P0A6F5 
Go to UniProtKB:  P0A6F5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A6F5
Protein Feature View
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
10 kDa chaperonin97Escherichia coli K-12Mutation(s): 0 
Gene Names: groS, groES, mopB, b4142, JW4102
UniProt
Find proteins for P0A6F9 (Escherichia coli (strain K12))
Explore P0A6F9 
Go to UniProtKB:  P0A6F9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A6F9
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP (Subject of Investigation/LOI)
Query on ADP
Download Ideal Coordinates CCD File 
BA [auth Aj],
DA [auth Ao],
FA [auth Ap],
HA [auth Au],
JA [auth Av],
BA [auth Aj],
DA [auth Ao],
FA [auth Ap],
HA [auth Au],
JA [auth Av],
LA [auth Ba],
NA [auth Bb],
PA [auth Bg],
RA [auth Bh],
TA [auth Bm],
V [auth Ac],
VA [auth Bn],
X [auth Ad],
Z [auth Ai]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
AA [auth Ai],
CA [auth Aj],
EA [auth Ao],
GA [auth Ap],
IA [auth Au],
AA [auth Ai],
CA [auth Aj],
EA [auth Ao],
GA [auth Ap],
IA [auth Au],
KA [auth Av],
MA [auth Ba],
OA [auth Bb],
QA [auth Bg],
SA [auth Bh],
UA [auth Bm],
W [auth Ac],
WA [auth Bn],
Y [auth Ad]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation19-74-20055

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-24
    Type: Initial release
  • Version 1.1: 2021-12-01
    Changes: Database references