7OAG

Cryo-EM structure of the plectasin fibril (single strand)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

pH- and concentration-dependent supramolecular assembly of a fungal defensin plectasin variant into helical non-amyloid fibrils.

Pohl, C.Effantin, G.Kandiah, E.Meier, S.Zeng, G.Streicher, W.Segura, D.R.Mygind, P.H.Sandvang, D.Nielsen, L.A.Peters, G.H.J.Schoehn, G.Mueller-Dieckmann, C.Noergaard, A.Harris, P.

(2022) Nat Commun 13: 3162-3162

  • DOI: https://doi.org/10.1038/s41467-022-30462-w
  • Primary Citation of Related Structures:  
    7O76, 7OAE, 7OAG

  • PubMed Abstract: 

    Self-assembly and fibril formation play important roles in protein behaviour. Amyloid fibril formation is well-studied due to its role in neurodegenerative diseases and characterized by refolding of the protein into predominantly β-sheet form. However, much less is known about the assembly of proteins into other types of supramolecular structures. Using cryo-electron microscopy at a resolution of 1.97 Å, we show that a triple-mutant of the anti-microbial peptide plectasin, PPI42, assembles into helical non-amyloid fibrils. The in vitro anti-microbial activity was determined and shown to be enhanced compared to the wildtype. Plectasin contains a cysteine-stabilised α-helix-β-sheet structure, which remains intact upon fibril formation. Two protofilaments form a right-handed protein fibril. The fibril formation is reversible and follows sigmoidal kinetics with a pH- and concentration dependent equilibrium between soluble monomer and protein fibril. This high-resolution structure reveals that α/β proteins can natively assemble into fibrils.


  • Organizational Affiliation

    Novozymes A/S, Bagsvaerd, Denmark. christin.pohl@biochemistry.lu.se.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fungal defensin plectasin
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y
40Pseudoplectania nigrellaMutation(s): 0 
Gene Names: DEF
UniProt
Find proteins for Q53I06 (Pseudoplectania nigrella)
Explore Q53I06 
Go to UniProtKB:  Q53I06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ53I06
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2022-04-27 
  • Deposition Author(s): Effantin, G.

Funding OrganizationLocationGrant Number
European Union (EU)European Union675074

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release
  • Version 1.1: 2022-11-16
    Changes: Database references