7MUQ

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.

Sheedlo, M.J.Durie, C.L.Chung, J.M.Chang, L.Roberts, J.Swanson, M.Lacy, D.B.Ohi, M.D.

(2021) Elife 10

  • DOI: https://doi.org/10.7554/eLife.70427
  • Primary Citation of Related Structures:  
    7MUC, 7MUD, 7MUE, 7MUQ, 7MUS, 7MUV, 7MUW, 7MUY

  • PubMed Abstract: 

    Legionella pneumophila is an opportunistic pathogen that causes the potentially fatal pneumonia known as Legionnaires' disease. The pathology associated with infection depends on bacterial delivery of effector proteins into the host via the membrane spanning Dot/Icm type IV secretion system (T4SS). We have determined sub-3.0 Å resolution maps of the Dot/Icm T4SS core complex by single particle cryo-EM. The high-resolution structural analysis has allowed us to identify proteins encoded outside the Dot/Icm genetic locus that contribute to the core T4SS structure. We can also now define two distinct areas of symmetry mismatch, one that connects the C18 periplasmic ring (PR) and the C13 outer membrane cap (OMC) and one that connects the C13 OMC with a 16-fold symmetric dome. Unexpectedly, the connection between the PR and OMC is DotH, with five copies sandwiched between the OMC and PR to accommodate the symmetry mismatch. Finally, we observe multiple conformations in the reconstructions that indicate flexibility within the structure.


  • Organizational Affiliation

    Department of Pharmacology, University of Minnesota, Minneapolis, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
IcmE protein1,048Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for O53087 (Legionella pneumophila)
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UniProt GroupO53087
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DotC303Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for O52184 (Legionella pneumophila)
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UniProt GroupO52184
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DotF269Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for O54615 (Legionella pneumophila)
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UniProt GroupO54615
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DotD163Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for O52183 (Legionella pneumophila)
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UniProt GroupO52183
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Type IV secretion protein IcmK361Legionella pneumophilaMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Inner membrane lipoprotein YiaD189Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for O53086 (Legionella pneumophila)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein, OmpA family protein249Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for Q5ZXS4 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DUF2807 domain-containing protein320Legionella pneumophilaMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Neurogenic locus notch124Legionella pneumophilaMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown protein fragment9Legionella pneumophilaMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown protein fragment48Legionella pneumophilaMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01AI118932
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesF32 AI150027-01
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States2T32DK007673
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesS10OD020011

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-06
    Type: Initial release
  • Version 1.1: 2022-04-20
    Changes: Database references