7MUQ | pdb_00007muq

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
J [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
KA [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
MB [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
OC [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
OG [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
YB [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XE [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XA [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
W [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
SF [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
KD [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
JF [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
I [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
NC [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
V [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
WA [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
XB [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
WE [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
RF [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
LB [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
JA [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
IF [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
GC [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
DG [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
DE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GE [auth BL]Secretin_Ne7muqBL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
J [auth GL]Secretin_Ne7muqGL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
KA [auth IL]Secretin_Ne7muqIL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
MB [auth KL]Secretin_Ne7muqKL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
OC [auth ML]Secretin_Ne7muqML1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
OG [auth FL]Secretin_Ne7muqFL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
YB [auth LL]Secretin_Ne7muqLL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
XE [auth CL]Secretin_Ne7muqCL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
XA [auth JL]Secretin_Ne7muqJL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
W [auth HL]Secretin_Ne7muqHL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
SF [auth EL]Secretin_Ne7muqEL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
KD [auth AL]Secretin_Ne7muqAL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
JF [auth DL]Secretin_Ne7muqDL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
I [auth GK]Secretin_Ne7muqGK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
NC [auth MK]Secretin_Ne7muqMK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
V [auth HK]Glyco_transf_41e7muqHK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
WA [auth JK]Secretin_Ne7muqJK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
XB [auth LK]Secretin_Ne7muqLK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
WE [auth CK]Secretin_Ne7muqCK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
RF [auth EK]Secretin_Ne7muqEK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
LB [auth KK]Secretin_Ne7muqKK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
JA [auth IK]Secretin_Ne7muqIK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
IF [auth DK]Secretin_Ne7muqDK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
GC [auth AK]Secretin_Ne7muqAK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
DG [auth FK]Secretin_Ne7muqFK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
DE [auth BK]Glyco_transf_41e7muqBK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
FE [auth FG]Secretin_Ne7muqFG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
GF [auth GG]Secretin_Ne7muqGG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
GG [auth JG]Secretin_Ne7muqJG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
HG [auth KG]Secretin_Ne7muqKG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
KG [auth NG]Secretin_Ne7muqNG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
MG [auth PG]Secretin_Ne7muqPG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
LG [auth OG]Secretin_Ne7muqOG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
JG [auth MG]Secretin_Ne7muqMG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
IG [auth LG]Secretin_Ne7muqLG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
FG [auth IG]Secretin_Ne7muqIG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
EG [auth HG]Secretin_Ne7muqHG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
ED [auth EG]Secretin_Ne7muqEG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
DC [auth DG]Secretin_Ne7muqDG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
CB [auth CG]Secretin_Ne7muqCG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
BA [auth BG]Secretin_Ne7muqBG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
A [auth AG]Secretin_Ne7muqAG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Neurogenic locus notch---
DUF2807 domain-containing protein---
Outer membrane protein, OmpA family protein- -
Inner membrane lipoprotein YiaD- -
Type IV secretion protein IcmK---
DotD- - -
DotF- - -
DotC- - -
Unknown protein fragment---
Unknown protein fragment---
IcmE protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR031618Putative type IV secretory system proteinFamily
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR057481Decapeptide repeatRepeat
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily