7MUQ

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM reconstructions of the Legionella pneumophila Dot/Icm T4SS reveal new components and provide insight into symmetry mismatch between subcomplexes

Sheedlo, M.J.Durie, C.L.Chung, J.M.Chang, L.Swanson, M.Lacy, D.B.Ohi, M.D.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
IcmE protein1048Legionella pneumophilaMutation(s): 0 
Gene Names: icmEC3927_01545
UniProt
Find proteins for O53087 (Legionella pneumophila)
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
DotC303Legionella pneumophilaMutation(s): 0 
Gene Names: dotCC3927_13505C3928_14230DI026_05545
UniProt
Find proteins for O52184 (Legionella pneumophila)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
DotF269Legionella pneumophilaMutation(s): 0 
Gene Names: dotFicmGC3927_01550
UniProt
Find proteins for O54615 (Legionella pneumophila)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
DotD163Legionella pneumophilaMutation(s): 0 
Gene Names: dotDC3927_13500DI026_05540DIZ50_08440
UniProt
Find proteins for O52183 (Legionella pneumophila)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Type IV secretion protein IcmK361Legionella pneumophilaMutation(s): 0 
Gene Names: C3927_01540
UniProt
Find proteins for A0A2S6FBG9 (Legionella pneumophila)
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Inner membrane lipoprotein YiaD189Legionella pneumophilaMutation(s): 0 
Gene Names: lphAyiaD_2C3927_01525DIZ50_13040ERS253249_00854NCTC12000_00581NCTC12024_00503
UniProt
Find proteins for O53086 (Legionella pneumophila)
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Outer membrane protein, OmpA family protein249Legionella pneumophilaMutation(s): 0 
UniProt
Find proteins for Q5ZXS4 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
DUF2807 domain-containing protein320Legionella pneumophilaMutation(s): 0 
Gene Names: C3927_14355
UniProt
Find proteins for A0A2S6F0F8 (Legionella pneumophila)
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Neurogenic locus notch124Legionella pneumophilaMutation(s): 0 
Gene Names: C3926_04445C3927_03385DIZ73_00855
UniProt
Find proteins for A0A2S6FAR3 (Legionella pneumophila)
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Unknown protein fragment9Legionella pneumophilaMutation(s): 0 
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Unknown protein fragment48Legionella pneumophilaMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01AI118932
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesF32 AI150027-01
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States2T32DK007673
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesS10OD020011

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-06
    Type: Initial release