7MGM

Structure of yeast cytoplasmic dynein with AAA3 Walker B mutation bound to Lis1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for cytoplasmic dynein-1 regulation by Lis1.

Gillies, J.P.Reimer, J.M.Karasmanis, E.P.Lahiri, I.Htet, Z.M.Leschziner, A.E.Reck-Peterson, S.L.

(2022) Elife 11

  • DOI: https://doi.org/10.7554/eLife.71229
  • Primary Citation of Related Structures:  
    7MGM

  • PubMed Abstract: 

    The lissencephaly 1 gene, LIS1 , is mutated in patients with the neurodevelopmental disease lissencephaly. The Lis1 protein is conserved from fungi to mammals and is a key regulator of cytoplasmic dynein-1, the major minus-end-directed microtubule motor in many eukaryotes. Lis1 is the only dynein regulator known to bind directly to dynein's motor domain, and by doing so alters dynein's mechanochemistry. Lis1 is required for the formation of fully active dynein complexes, which also contain essential cofactors: dynactin and an activating adaptor. Here, we report the first high-resolution structure of the yeast dynein-Lis1 complex. Our 3.1 Å structure reveals, in molecular detail, the major contacts between dynein and Lis1 and between Lis1's ß-propellers. Structure-guided mutations in Lis1 and dynein show that these contacts are required for Lis1's ability to form fully active human dynein complexes and to regulate yeast dynein's mechanochemistry and in vivo function.


  • Organizational Affiliation

    Department of Cellular and Molecular Medicine, University of California, San Diego, San Diego, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
dynein AAA3-WalkerB mutant (E2488Q)2,875Saccharomyces cerevisiaeMutation(s): 1 
UniProt
Find proteins for P36022 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36022 
Go to UniProtKB:  P36022
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36022
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear distribution protein PAC1B [auth C],
C [auth B]
495Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P39946 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39946 
Go to UniProtKB:  P39946
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39946
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM107214

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-19
    Type: Initial release