7KIF

Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 transcription factor


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 transcription factor

Lilic, M.Darst, S.A.Campbell, E.A.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaA, B347Mycobacterium tuberculosisMutation(s): 0 
Gene Names: rpoA
EC: 2.7.7.6
UniProt
Find proteins for P9WGZ1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaC1172Mycobacterium tuberculosisMutation(s): 0 
Gene Names: rpoBMRA_0676
EC: 2.7.7.6
UniProt
Find proteins for P9WGY9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta'D1318Mycobacterium tuberculosisMutation(s): 0 
Gene Names: rpoCE5M52_05480ERS007665_00591ERS013471_00574ERS023446_00410ERS075361_00813ERS094182_01340F6W99_03342
EC: 2.7.7.6
UniProt
Find proteins for P9WGY7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omegaE110Mycobacterium tuberculosisMutation(s): 0 
Gene Names: rpoZERS007703_04032ERS007720_04749ERS094182_01030
EC: 2.7.7.6
UniProt
Find proteins for P9WGY5 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
RNA polymerase sigma factor SigAF528Mycobacterium tuberculosisMutation(s): 0 
Gene Names: sigAERDMAN_2966
UniProt
Find proteins for P9WGI1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
RNA polymerase-binding protein RbpAG [auth J]111Mycobacterium tuberculosisMutation(s): 0 
Gene Names: rbpA
UniProt
Find proteins for P9WHJ5 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
RNA polymerase-binding transcription factor CarDH [auth M]162Mycobacterium tuberculosisMutation(s): 0 
Gene Names: carD
UniProt
Find proteins for P9WJG3 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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  • Reference Sequence
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Probable transcriptional regulator WhiB7K [auth Z]92Mycobacterium tuberculosisMutation(s): 0 
Gene Names: whiB7Rv3197ARv3197.1
UniProt
Find proteins for Q6MX01 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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  • Reference Sequence
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Entity ID: 8
MoleculeChainsLengthOrganismImage
DNA (63-MER)I [auth O]100Mycobacterium tuberculosis
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Entity ID: 9
MoleculeChainsLengthOrganismImage
DNA (55-MER)J [auth P]100Mycobacterium tuberculosis
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4 (Subject of Investigation/LOI)
Query on SF4

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O [auth Z]IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
ZN
Query on ZN

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L [auth D], M [auth D]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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N [auth D]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-21
    Type: Initial release