7ADP

Cryo-EM structure of human ER membrane protein complex in GDN detergent


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.

Miller-Vedam, L.E.Brauning, B.Popova, K.D.Schirle Oakdale, N.T.Bonnar, J.L.Prabu, J.R.Boydston, E.A.Sevillano, N.Shurtleff, M.J.Stroud, R.M.Craik, C.S.Schulman, B.A.Frost, A.Weissman, J.S.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.62611
  • Primary Citation of Related Structures:  
    7ADO, 7ADP, 7KRA, 7KTX

  • PubMed Abstract: 

    Membrane protein biogenesis in the endoplasmic reticulum (ER) is complex and failure-prone. The ER membrane protein complex (EMC), comprising eight conserved subunits, has emerged as a central player in this process. Yet, we have limited understanding of how EMC enables insertion and integrity of diverse clients, from tail-anchored to polytopic transmembrane proteins. Here, yeast and human EMC cryo-EM structures reveal conserved intricate assemblies and human-specific features associated with pathologies. Structure-based functional studies distinguish between two separable EMC activities, as an insertase regulating tail-anchored protein levels and a broader role in polytopic membrane protein biogenesis. These depend on mechanistically coupled yet spatially distinct regions including two lipid-accessible membrane cavities which confer client-specific regulation, and a non-insertase EMC function mediated by the EMC lumenal domain. Our studies illuminate the structural and mechanistic basis of EMC's multifunctionality and point to its role in differentially regulating the biogenesis of distinct client protein classes.


  • Organizational Affiliation

    Molecular, Cellular, and Computational Biophysics Graduate Program, University of California, San Francisco, San Francisco, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 1993Homo sapiensMutation(s): 0 
Gene Names: EMC1KIAA0090PSEC0263
Membrane Entity: Yes 
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Find proteins for Q8N766 (Homo sapiens)
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Go to UniProtKB:  Q8N766
PHAROS:  Q8N766
GTEx:  ENSG00000127463 
Entity Groups  
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UniProt GroupQ8N766
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 2297Homo sapiensMutation(s): 0 
Gene Names: EMC2KIAA0103TTC35
Membrane Entity: Yes 
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PHAROS:  Q15006
GTEx:  ENSG00000104412 
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UniProt GroupQ15006
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 3261Homo sapiensMutation(s): 0 
Gene Names: EMC3TMEM111
Membrane Entity: Yes 
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PHAROS:  Q9P0I2
GTEx:  ENSG00000125037 
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UniProt GroupQ9P0I2
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 4183Homo sapiensMutation(s): 0 
Gene Names: EMC4TMEM85HSPC184PIG17
Membrane Entity: Yes 
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GTEx:  ENSG00000128463 
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UniProt GroupQ5J8M3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Membrane magnesium transporter 1139Homo sapiensMutation(s): 0 
Gene Names: MMGT1EMC5TMEM32
Membrane Entity: Yes 
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GTEx:  ENSG00000169446 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 6110Homo sapiensMutation(s): 0 
Gene Names: EMC6TMEM93
Membrane Entity: Yes 
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GTEx:  ENSG00000127774 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 8G [auth H]210Homo sapiensMutation(s): 0 
Gene Names: EMC8C16orf2C16orf4COX4ALCOX4NBFAM158BNOC4
Membrane Entity: Yes 
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GTEx:  ENSG00000131148 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 10H [auth I]263Homo sapiensMutation(s): 0 
Gene Names: EMC10C19orf63HSM1INM02UNQ764/PRO1556
Membrane Entity: Yes 
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PHAROS:  Q5UCC4
GTEx:  ENSG00000161671 
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UniProt GroupQ5UCC4
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySCHU 3196/1-1
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-02
    Type: Initial release
  • Version 1.1: 2020-12-09
    Changes: Database references