7Z3M | pdb_00007z3m

Putative Phage Recombinase UvsX

PDB DOI: https://doi.org/10.2210/pdb7Z3M/pdb

Classification: RECOMBINATION
Organism(s): unidentified
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-03-02 Released: 2023-09-13
Deposition Author(s): Freitag-Pohl, S., Tarrant, E.J., Pohl, E.
Funding Organization(s): European Union (EU)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.251 (Depositor), 0.253 (DCC)
R-Value Work:
0.204 (Depositor), 0.205 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7Z3M

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structures of two novel recombinases RecA

Freitag-Pohl, S., Pohl, E.

To be published.

Macromolecule Content

Total Structure Weight: 40.95 kDa
Atom Count: 2,303
Modeled Residue Count: 304
Deposited Residue Count: 373
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
recombinase	A [auth AAA]	373	unidentified	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain B [auth AAA] MOL2 format, chain B [auth AAA] mmCIF format, chain B [auth AAA]	B [auth AAA]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth AAA] Interactions & Density Focus chain B [auth AAA]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.251 (Depositor), 0.253 (DCC)
R-Value Work: 0.204 (Depositor), 0.205 (DCC)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.895	α = 90
b = 90.895	β = 90
c = 101.438	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
Arcimboldo	phasing
BUCCANEER	model building

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-09-13

Deposition Author(s):

Freitag-Pohl, S.

Funding Organization	Location	Grant Number
European Union (EU)	European Union	685778

Revision History (Full details and data files)

Version 1.0: 2023-09-13
Type: Initial release
Version 1.1: 2024-08-21
Changes: Structure summary
Version 1.2: 2026-03-04
Changes: Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.