7Z3M | pdb_00007z3m

Putative Phage Recombinase UvsX

PDB DOI: https://doi.org/10.2210/pdb7Z3M/pdb

Classification: RECOMBINATION
Organism(s): unidentified
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-03-02 Released: 2023-09-13
Deposition Author(s): Freitag-Pohl, S., Tarrant, E.J., Pohl, E.
Funding Organization(s): European Union (EU)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.251 (Depositor), 0.250 (DCC)
R-Value Work:
0.204 (Depositor), 0.210 (DCC)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structures of two novel recombinases RecA

Freitag-Pohl, S., Pohl, E.

To be published.

Macromolecule Content

Total Structure Weight: 40.95 kDa
Atom Count: 2,303
Modeled Residue Count: 304
Deposited Residue Count: 373
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
recombinase	A [auth AAA]	373	unidentified	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain B [auth AAA] MOL2 format, chain B [auth AAA] mmCIF format, chain B [auth AAA]	B [auth AAA]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth AAA] Interactions & Density Focus chain B [auth AAA]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.251 (Depositor), 0.250 (DCC)
R-Value Work: 0.204 (Depositor), 0.210 (DCC)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.895	α = 90
b = 90.895	β = 90
c = 101.438	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
Arcimboldo	phasing
BUCCANEER	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-09-13

Deposition Author(s):

Freitag-Pohl, S.

Funding Organization	Location	Grant Number
European Union (EU)	European Union	685778

Revision History (Full details and data files)

Version 1.0: 2023-09-13
Type: Initial release
Version 1.1: 2024-08-21
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.