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Putative Phage Recombinase UvsX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IO5 3IO5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 100mM MES pH 6.5 1.6M ammonium sulphate 6% 1,4-Dioxane
Crystal Properties Matthews coefficient Solvent content 2.96 58.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.895 α = 90 b = 90.895 β = 90 c = 101.438 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.45 99.7 0.092 0.098 0.043 0.999 10.4 9.9 32113 43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 98.2 1.723 0.45 0.95 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3IO5 2.001 41.509 32070 1509 99.835 0.206 0.2039 0.2048 0.2506 0.2534 54.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.289 0.645 1.289 -4.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.061 r_dihedral_angle_4_deg 22.737 r_dihedral_angle_3_deg 14.303 r_lrange_it 8.917 r_lrange_other 8.917 r_scangle_it 7.586 r_scangle_other 7.583 r_dihedral_angle_1_deg 7.251 r_mcangle_it 6.478 r_mcangle_other 6.476
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.061 r_dihedral_angle_4_deg 22.737 r_dihedral_angle_3_deg 14.303 r_lrange_it 8.917 r_lrange_other 8.917 r_scangle_it 7.586 r_scangle_other 7.583 r_dihedral_angle_1_deg 7.251 r_mcangle_it 6.478 r_mcangle_other 6.476 r_scbond_it 5.572 r_scbond_other 5.572 r_mcbond_it 5.105 r_mcbond_other 5.097 r_angle_refined_deg 1.605 r_angle_other_deg 1.421 r_symmetry_xyhbond_nbd_refined 0.239 r_nbd_refined 0.213 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.169 r_nbd_other 0.152 r_xyhbond_nbd_refined 0.148 r_symmetry_nbd_refined 0.094 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2252 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing Arcimboldo phasing BUCCANEER model building