7YXW

Structure of the p22phox A200G mutant in complex with p47phox peptide

PDB DOI: https://doi.org/10.2210/pdb7YXW/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2022-02-16 Released: 2022-03-30
Deposition Author(s): Cukier, C.D., Vuillard, L.M., Komjati, B., Szlavik, Z.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.269
R-Value Work: 0.241
R-Value Observed: 0.243

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Targeting NOX2 via p47/phox-p22/phox Inhibition with Novel Triproline Mimetics

Garsi, J.B., Komjati, B., Cullia, G., Fejes, I., Sipos, M., Sipos, Z., Fordos, E., Markacz, P., Balazs, B., Lancelot, N., Berger, S., Raimbaud, E., Brown, D., Vuillard, L.M., Haberkorn, L., Cukier, C., Szlavik, Z., Hanessian, S.

(2022) ACS Med Chem Lett 13: 949-954

DOI: https://doi.org/10.1021/acsmedchemlett.2c00094

Macromolecule Content

Total Structure Weight: 16.58 kDa
Atom Count: 1,093
Modelled Residue Count: 139
Deposited Residue Count: 149
Unique protein chains: 2

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-245 light chain	A [auth D]	18	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P13498 (Homo sapiens) Explore P13498 Go to UniProtKB: P13498
PHAROS: P13498 GTEx: ENSG00000051523
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P13498
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Neutrophil cytosol factor 1	B [auth A]	131	Homo sapiens	Mutation(s): 2 Gene Names: NCF1, NOXO2, SH3PXD1A
UniProt & NIH Common Fund Data Resources
Find proteins for P14598 (Homo sapiens) Explore P14598 Go to UniProtKB: P14598
PHAROS: P14598 GTEx: ENSG00000158517
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P14598
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.269
R-Value Work: 0.241
R-Value Observed: 0.243
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.444	α = 90
b = 102.444	β = 90
c = 56.075	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-03-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2022-03-30
Type: Initial release
Version 1.1: 2022-06-22
Changes: Database references
Version 1.2: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.