7YXW | pdb_00007yxw

Structure of the p22phox A200G mutant in complex with p47phox peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	SH3-domain	8033288	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	YTH	e7yxwA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: YTH	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF00018	SH3 domain (SH3_1)	SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A]	Neutrophil cytosol factor 1	ion binding binding anion binding phosphatidylinositol binding small molecule binding electron transfer activity SH3 domain binding protein binding protein domain specific binding phosphatidylinositol bisphosphate binding phosphatidylinositol-3,4-bisphosphate binding superoxide-generating NADPH oxidase activator activity enzyme regulator activity enzyme activator activity ion binding binding anion binding phosphatidylinositol binding small molecule binding electron transfer activity SH3 domain binding protein binding protein domain specific binding phosphatidylinositol bisphosphate binding phosphatidylinositol-3,4-bisphosphate binding superoxide-generating NADPH oxidase activator activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity oxidoreductase activity superoxide-generating NAD(P)H oxidase activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	regulation of immune effector process multicellular organismal process regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus regulation of response to external stimulus response to biotic stimulus regulation of respiratory burst involved in inflammatory response response to stress regulation of response to stress innate immune response regulation of immune system process regulation of immune effector process multicellular organismal process regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus regulation of response to external stimulus response to biotic stimulus regulation of respiratory burst involved in inflammatory response response to stress regulation of response to stress innate immune response regulation of immune system process regulation of multicellular organismal process response to external biotic stimulus regulation of respiratory burst production of molecular mediator involved in inflammatory response regulation of biological process respiratory burst involved in defense response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of inflammatory response immune effector process respiratory burst regulation of response to stimulus immune system process defense response to other organism respiratory burst involved in inflammatory response regulation of immune response metabolic process cellular process inflammatory response regulation of metabolic process superoxide metabolic process superoxide anion generation reactive oxygen species metabolic process neutrophil-mediated killing of symbiont cell neutrophil-mediated killing of fungus disruption of cell in another organism myeloid leukocyte mediated immunity neutrophil mediated immunity leukocyte mediated immunity killing of cells of another organism neutrophil mediated cytotoxicity leukocyte mediated cytotoxicity defense response to fungus response to fungus disruption of anatomical structure in another organism cell killing defense response to bacterium response to bacterium neutrophil-mediated killing of bacterium neutrophil-mediated killing of gram-positive bacterium defense response to Gram-positive bacterium response to yeast cellular response to stimulus homeostatic process response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose response to chemical glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus localization establishment of protein localization cellular localization establishment of protein localization to membrane protein targeting localization within membrane establishment of localization protein targeting to membrane cell population proliferation epithelial cell proliferation cellular response to testosterone stimulus response to ketone response to lipid response to testosterone cellular response to lipid cellular response to ketone reactive oxygen species biosynthetic process biosynthetic process hydrogen peroxide metabolic process hydrogen peroxide biosynthetic process cellular defense response icosanoid metabolic process leukotriene metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process organic acid metabolic process	cellular anatomical structure membrane membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome cellular anatomical structure membrane membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome cytoplasm vesicle endocytic vesicle lysosome cytosol cell periphery plasma membrane protein-containing complex catalytic complex plasma membrane protein complex NADPH oxidase complex membrane protein complex oxidoreductase complex somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection cell body neuronal cell body cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane
A [auth D]	Cytochrome b-245 light chain	electron transfer activity SH3 domain binding protein binding binding protein domain specific binding cation binding ion binding metal ion binding small molecule binding protein heterodimerization activity protein dimerization activity tetrapyrrole binding heme binding oxidoreductase activity electron transfer activity SH3 domain binding protein binding binding protein domain specific binding cation binding ion binding metal ion binding small molecule binding protein heterodimerization activity protein dimerization activity tetrapyrrole binding heme binding oxidoreductase activity superoxide-generating NAD(P)H oxidase activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	response to stimulus response to chemical response to xenobiotic stimulus regulation of biological process regulation of cellular process reactive oxygen species metabolic process biological regulation positive regulation of biological process regulation of superoxide metabolic process positive regulation of reactive oxygen species metabolic process superoxide metabolic process positive regulation of metabolic process superoxide anion generation metabolic process response to stimulus response to chemical response to xenobiotic stimulus regulation of biological process regulation of cellular process reactive oxygen species metabolic process biological regulation positive regulation of biological process regulation of superoxide metabolic process positive regulation of reactive oxygen species metabolic process superoxide metabolic process positive regulation of metabolic process superoxide anion generation metabolic process cellular process positive regulation of superoxide anion generation regulation of superoxide anion generation regulation of metabolic process regulation of reactive oxygen species metabolic process positive regulation of cellular process biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of body fluid levels multicellular organismal process secretion by tissue secretion transport mucus secretion establishment of localization body fluid secretion localization regulation of biological quality regulation of localization import into cell positive regulation of cellular component organization regulation of cellular component organization vesicle-mediated transport cellular component organization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport endocytosis cellular response to stimulus response to ketone response to lipid response to alcohol response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to phorbol 13-acetate 12-myristate cellular response to alcohol cellular response to phorbol 13-acetate 12-myristate cellular response to lipid cellular response to ketone cellular response to acid chemical cellular response to nitrogen compound cellular response to amino acid stimulus cellular response to L-glutamine response to L-glutamine response to nitrogen compound response to amino acid response to acid chemical regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus regulation of response to external stimulus positive regulation of response to stimulus defense response to bacterium positive regulation of defense response to bacterium positive regulation of response to external stimulus regulation of response to stress response to bacterium regulation of defense response to bacterium regulation of response to stimulus positive regulation of defense response cell population proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus reactive oxygen species biosynthetic process biosynthetic process hydrogen peroxide metabolic process hydrogen peroxide biosynthetic process response to aldosterone response to endogenous stimulus response to mineralocorticoid response to corticosteroid response to hormone response to steroid hormone response to nutrient levels regulation of calcium ion transport monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport intercellular transport monoatomic ion transport monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport cytochrome complex assembly cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly regulation of growth growth positive regulation of cell growth regulation of cell growth cell growth positive regulation of growth cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus response to ionizing radiation cellular response to gamma radiation response to radiation cellular response to abiotic stimulus response to gamma radiation interleukin-6 production positive regulation of macromolecule biosynthetic process positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production homeostatic process cellular response to glucose stimulus intracellular glucose homeostasis response to hexose cellular response to carbohydrate stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus response to activity positive regulation of cell communication immune response-regulating cell surface receptor signaling pathway positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of signal transduction cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response-activating cell surface receptor signaling pathway regulation of innate immune response regulation of toll-like receptor 2 signaling pathway regulation of pattern recognition receptor signaling pathway activation of innate immune response regulation of immune response activation of immune response signaling innate immune response activating cell surface receptor signaling pathway positive regulation of toll-like receptor 2 signaling pathway immune response-regulating signaling pathway toll-like receptor 2 signaling pathway cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway regulation of cell communication positive regulation of signaling response to peptide response to cytokine response to interleukin-1 cellular localization establishment of localization in cell cellular response to tumor necrosis factor cellular response to cytokine stimulus response to tumor necrosis factor regulation of systemic arterial blood pressure by renin-angiotensin regulation of systemic arterial blood pressure by hormone system process negative regulation of renal output by angiotensin regulation of blood volume by renin-angiotensin regulation of systemic arterial blood pressure mediated by a chemical signal positive regulation of systemic arterial blood pressure regulation of renal system process negative regulation of glomerular filtration by angiotensin regulation of system process negative regulation of biological process positive regulation of blood pressure negative regulation of glomerular filtration regulation of glomerular filtration circulatory system process regulation of renal output by angiotensin glomerular filtration renal filtration blood circulation renal system process regulation of blood pressure regulation of systemic arterial blood pressure endocrine process negative regulation of multicellular organismal process response to mechanical stimulus cellular response to mechanical stimulus cellular response to external stimulus positive regulation of reactive oxygen species biosynthetic process regulation of reactive oxygen species biosynthetic process regulation of mucus secretion regulation of secretion positive regulation of secretion positive regulation of mucus secretion respiratory burst muscle hypertrophy muscle adaptation smooth muscle adaptation muscle system process smooth muscle hypertrophy inflammatory response regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation response to angiotensin response to peptide hormone cellular response to peptide hormone stimulus cellular response to angiotensin cellular response to endogenous stimulus cellular response to hormone stimulus	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection perinuclear endoplasmic reticulum perinuclear region of cytoplasm endoplasmic reticulum phagocytic vesicle phagocytic vesicle membrane endocytic vesicle membrane endocytic vesicle actin filament bundle intracellular membraneless organelle actin cytoskeleton actomyosin cytoskeleton membraneless organelle stress fiber contractile actin filament bundle cell body neuronal cell body tertiary granule membrane tertiary granule anchoring junction cell junction focal adhesion cell-substrate junction cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane protein-containing complex catalytic complex plasma membrane protein complex NADPH oxidase complex membrane protein complex oxidoreductase complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR034909	Neutrophil cytosol factor 1, PX domain	Domain
B [auth A]	IPR051228	NADPH Oxidase and PX Domain-Containing	Family
B [auth A]	IPR032136	Neutrophil cytosol factor 1, PBR/AIR	Domain
B [auth A]	IPR001683	Phox homology	Domain
B [auth A]	IPR036028	SH3-like domain superfamily	Homologous Superfamily
B [auth A]	IPR035757	Neutrophil cytosol factor 1, second SH3 domain	Domain
B [auth A]	IPR015039	Neutrophil cytosol factor 1, C-terminal	Domain
B [auth A]	IPR035756	Neutrophil cytosol factor 1, first SH3 domain	Domain
B [auth A]	IPR036871	PX domain superfamily	Homologous Superfamily
B [auth A]	IPR001452	SH3 domain	Domain
B [auth A]	IPR001655	Neutrophil cytosol factor 1	Family
A [auth D]	IPR007732	Cytochrome b558 alpha-subunit	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth A]	Pharos: P14598	chronic granulomatous disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 1 abdominal aortic aneurysm rheumatoid arthritis brain aneurysm hypertensive disorder Sjogren syndrome diabetes mellitus Diabetes Mellitus, Experimental chronic kidney disease phagocyte bactericidal dysfunction systemic lupus erythematosus Williams syndrome atrial fibrillation
A [auth D]	Pharos: P13498	chronic granulomatous disease granulomatous disease, chronic, autosomal recessive, cytochrome b-negative Liver Cirrhosis, Experimental atherosclerosis type 2 diabetes mellitus chronic kidney disease hypertensive disorder kidney failure cirrhosis of liver heart disease interstitial cystitis malignant pancreatic neoplasm ovarian cancer phagocyte bactericidal dysfunction psoriasis chronic granulomatous disease granulomatous disease, chronic, autosomal recessive, cytochrome b-negative Liver Cirrhosis, Experimental atherosclerosis type 2 diabetes mellitus chronic kidney disease hypertensive disorder kidney failure cirrhosis of liver heart disease interstitial cystitis malignant pancreatic neoplasm ovarian cancer phagocyte bactericidal dysfunction psoriasis cutaneous lupus erythematosus esophageal adenocarcinoma invasive ductal breast carcinoma lung carcinoma maturity-onset diabetes of the young pancreatic ductal adenocarcinoma arteriosclerosis disorder pilocytic astrocytoma granulomatous disease, chronic, X-linked malignant ependymoma osteosarcoma periodontitis plasma cell myeloma Barrett esophagus subependymal giant cell astrocytoma glioblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.