7YVY

Crystal structure of thiolase PFC_04095 from Pyrococcus furiosus

• PDB DOI: https://doi.org/10.2210/pdb7YVY/pdb

• Classification: TRANSFERASE
• Organism(s): Pyrococcus furiosus COM1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-08-20 Released: 2023-09-06 
• Deposition Author(s): Singh, R., Das, A.K.
• Funding Organization(s): Department of Biotechnology (DBT, India)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.252 
• R-Value Work: 0.209 
• R-Value Observed: 0.211 

Literature

Crystal structure of thiolase PFC_04095 from Pyrococcus furiosus

Singh, R., Das, A.K.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Macromolecule Content

• Total Structure Weight: 123.06 kDa 
• Atom Count: 7,760 
• Modelled Residue Count: 1,091 
• Deposited Residue Count: 1,164 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA acetyltransferase	A, B, C	388	Pyrococcus furiosus COM1	Mutation(s): 0  Gene Names: PFC_04095 EC: 2.3.1.9
UniProt
Find proteins for I6V154 (Pyrococcus furiosus COM1) Explore I6V154  Go to UniProtKB:  I6V154

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.252 
• R-Value Work: 0.209 
• R-Value Observed: 0.211 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 133.246	α = 90
b = 113.482	β = 123.03
c = 107.533	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-06 
Deposition Author(s): Singh, R., Das, A.K.

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Funding Organization	Location	Grant Number
Department of Biotechnology (DBT, India)	India	BT/PR40990/MED/29/1540/2020

Revision History  

• Version 1.0: 2023-09-06
  Type: Initial release