7X4B

Crystal Structure of An Anti-CRISPR Protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A redox switch regulates the assembly and anti-CRISPR activity of AcrIIC1.

Zhao, Y.Hu, J.Yang, S.S.Zhong, J.Liu, J.Wang, S.Jiao, Y.Jiang, F.Zhai, R.Ren, B.Cong, H.Zhu, Y.Han, F.Zhang, J.Xu, Y.Huang, Z.Zhang, S.Yang, F.

(2022) Nat Commun 13: 7071-7071

  • DOI: https://doi.org/10.1038/s41467-022-34551-8
  • Primary Citation of Related Structures:  
    7X31, 7X4B

  • PubMed Abstract: 

    Anti-CRISPRs (Acrs) are natural inhibitors of bacteria's CRISPR-Cas systems, and have been developed as a safeguard to reduce the off-target effects of CRISPR gene-editing technology. Acrs can directly bind to CRISPR-Cas complexes and inhibit their activities. However, whether this process is under regulation in diverse eukaryotic cellular environments is poorly understood. In this work, we report the discovery of a redox switch for NmeAcrIIC1, which regulates NmeAcrIIC1's monomer-dimer interconversion and inhibitory activity on Cas9. Further structural studies reveal that a pair of conserved cysteines mediates the formation of inactive NmeAcrIIC1 dimer and directs the redox cycle. The redox switch also applies to the other two AcrIIC1 orthologs. Moreover, by replacing the redox-sensitive cysteines, we generated a robust AcrIIC1 variant that maintains potent inhibitory activity under various redox conditions. Our results reveal a redox-dependent regulation mechanism of Acr, and shed light on the design of superior Acr for CRISPR-Cas systems.


  • Organizational Affiliation

    School of Life Science and Technology, Harbin Institute of Technology, Harbin, 150080, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Anti-CRISPR protein (AcrIIC1)
A, B
86Neisseria meningitidisMutation(s): 0 
UniProt
Find proteins for A0A2D0TCG3 (Neisseria meningitidis)
Explore A0A2D0TCG3 
Go to UniProtKB:  A0A2D0TCG3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2D0TCG3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.198 
  • Space Group: P 42
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.71α = 90
b = 82.71β = 90
c = 34.422γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31900863
National Natural Science Foundation of China (NSFC)China32071297

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-26
    Type: Initial release
  • Version 1.1: 2023-02-22
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description