7WZM

Crystal structure of Cytochrome P450 184A1 from streptomyces avermitilis in complex with Oleic acid

• PDB DOI: https://doi.org/10.2210/pdb7WZM/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Streptomyces avermitilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-02-18 Released: 2023-02-22 
• Deposition Author(s): Kim, V.C., Kim, D.G., Lee, S.G., Lee, G.H., Lee, S.A., Kang, L.W.
• Funding Organization(s): Not funded

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 0.221 
• R-Value Work: 0.188 
• R-Value Observed: 0.190 

Literature

Crystal structure of Cytochrome P450 184A1 from streptomyces avermitilis in complex with Oleic acid

Kim, V.C., Kim, D.G., Lee, S.G., Lee, G.H., Lee, S.A., Kang, L.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 54.67 kDa 
• Atom Count: 3,710 
• Modelled Residue Count: 458 
• Deposited Residue Count: 492 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative cytochrome P450	A	492	Streptomyces avermitilis	Mutation(s): 0  Gene Names: cyp21, SAVERM_5111
UniProt
Find proteins for Q82D73 (Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)) Explore Q82D73  Go to UniProtKB:  Q82D73

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	C [auth A]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L
OLA (Subject of Investigation/LOI)	B [auth A]	OLEIC ACID C18 H34 O2 ZQPPMHVWECSIRJ-KTKRTIGZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 0.221 
• R-Value Work: 0.188 
• R-Value Observed: 0.190 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.687	α = 90
b = 62.652	β = 90
c = 132.228	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-22 
Deposition Author(s): Kim, V.C., Kim, D.G., Lee, S.G., Lee, G.H., Lee, S.A., Kang, L.W.

---

Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-02-22
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description