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Crystal structure of Cytochrome P450 184A1 from streptomyces avermitilis in complex with Oleic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7WZL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 288.15 15% PEG3350, 0.2 M sodium chloride, 0.1M HEPES, pH 7.0, 5% MPD
Crystal Properties Matthews coefficient Solvent content 2.11 41.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.687 α = 90 b = 62.652 β = 90 c = 132.228 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2021-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 50 99.9 0.949 36.567 13 52789
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.71 0.889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7WZL 1.68 45.52 50100 2619 99.83 0.1895 0.1879 0.1954 0.221 0.2245 RANDOM 14.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.28 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.81 r_dihedral_angle_4_deg 17.084 r_dihedral_angle_3_deg 13.639 r_dihedral_angle_1_deg 6.622 r_angle_refined_deg 1.853 r_angle_other_deg 1.573 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.81 r_dihedral_angle_4_deg 17.084 r_dihedral_angle_3_deg 13.639 r_dihedral_angle_1_deg 6.622 r_angle_refined_deg 1.853 r_angle_other_deg 1.573 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3469 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing