7VI4

Electron crystallographic structure of TIA-1 prion-like domain, A381T mutant


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 0.95 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.256 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures.

Sekiyama, N.Takaba, K.Maki-Yonekura, S.Akagi, K.I.Ohtani, Y.Imamura, K.Terakawa, T.Yamashita, K.Inaoka, D.Yonekura, K.Kodama, T.S.Tochio, H.

(2022) Proc Natl Acad Sci U S A 119: e2122523119-e2122523119

  • DOI: https://doi.org/10.1073/pnas.2122523119
  • Primary Citation of Related Structures:  
    7VI4, 7VI5

  • PubMed Abstract: 

    T cell intracellular antigen-1 (TIA-1) plays a central role in stress granule (SG) formation by self-assembly via the prion-like domain (PLD). In the TIA-1 PLD, amino acid mutations associated with neurodegenerative diseases, such as amyotrophic lateral sclerosis (ALS) or Welander distal myopathy (WDM), have been identified. However, how these mutations affect PLD self-assembly properties has remained elusive. In this study, we uncovered the implicit pathogenic structures caused by the mutations. NMR analysis indicated that the dynamic structures of the PLD are synergistically determined by the physicochemical properties of amino acids in units of five residues. Molecular dynamics simulations and three-dimensional electron crystallography, together with biochemical assays, revealed that the WDM mutation E384K attenuated the sticky properties, whereas the ALS mutations P362L and A381T enhanced the self-assembly by inducing β-sheet interactions and highly condensed assembly, respectively. These results suggest that the P362L and A381T mutations increase the likelihood of irreversible amyloid fibrillization after phase-separated droplet formation, and this process may lead to pathogenicity.


  • Organizational Affiliation

    Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TIA-1 prion-like domain10Homo sapiensMutation(s): 1 
UniProt & NIH Common Fund Data Resources
Find proteins for P31483 (Homo sapiens)
Explore P31483 
Go to UniProtKB:  P31483
PHAROS:  P31483
GTEx:  ENSG00000116001 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP31483
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 30.68α = 90
b = 9.63β = 116.15
c = 26.25γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanJP19K06584
Japan Science and TechnologyJapanJPMJCR1762
Japan Science and TechnologyJapanJPMJMI20G5
Ministry of Education, Culture, Sports, Science and Technology (Japan)JapanJPMXS0421700121
Japan Agency for Medical Research and Development (AMED)Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-28
    Type: Initial release