7VCF

Cryo-EM structure of Chlamydomonas TOC-TIC supercomplex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.2 of the entry. See complete history


Literature

Structure of a TOC-TIC supercomplex spanning two chloroplast envelope membranes.

Jin, Z.Wan, L.Zhang, Y.Li, X.Cao, Y.Liu, H.Fan, S.Cao, D.Wang, Z.Li, X.Pan, J.Dong, M.Q.Wu, J.Yan, Z.

(2022) Cell 185: 4788-4800.e13

  • DOI: https://doi.org/10.1016/j.cell.2022.10.030
  • Primary Citation of Related Structures:  
    7VCF

  • PubMed Abstract: 

    The TOC and TIC complexes are essential translocons that facilitate the import of the nuclear genome-encoded preproteins across the two envelope membranes of chloroplast, but their exact molecular identities and assembly remain unclear. Here, we report a cryoelectron microscopy structure of TOC-TIC supercomplex from Chlamydomonas, containing a total of 14 identified components. The preprotein-conducting pore of TOC is a hybrid β-barrel co-assembled by Toc120 and Toc75, while the potential translocation path of TIC is formed by transmembrane helices from Tic20 and YlmG, rather than a classic model of Tic110. A rigid intermembrane space (IMS) scaffold bridges two chloroplast membranes, and a large hydrophilic cleft on the IMS scaffold connects TOC and TIC, forming a pathway for preprotein translocation. Our study provides structural insights into the TOC-TIC supercomplex composition, assembly, and preprotein translocation mechanism, and lays a foundation to interpret the evolutionary conservation and diversity of this fundamental translocon machinery.


  • Organizational Affiliation

    Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang 310024, China; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang 310024, China; Institute of Biology, Westlake Institute for Advanced Study, Hangzhou, Zhejiang 310024, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tic2141,995Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: ycf78
Membrane Entity: Yes 
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UniProt GroupP36495
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Toc75798Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: TOC75CHLRE_03g175200v5CHLREDRAFT_195512
UniProt
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UniProt GroupA8IE32
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Toc52477Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_12g532100v5
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Tic13124Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_12g527550v5CHLREDRAFT_184901
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Toc120E [auth F]967Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_17g734300v5
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Toc34F [auth G]397Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: TOC34CHLREDRAFT_187290
EC: 3.6.5
Membrane Entity: Yes 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
YlmGG [auth H]187Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_02g080250v5
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Toc39H [auth I]363Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_17g722750v5CHLREDRAFT_192448
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Toc10I [auth K]98Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_02g142246v5
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Tic12J [auth M]127Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_09g402100v5CHLREDRAFT_184536
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown fragmentK [auth N]18Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Tic35L [auth O]329Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_03g164700v5
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Tic56M [auth Q]244Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_17g727100v5CHLREDRAFT_184868
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Tic100N [auth T]955Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_06g300550v5
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Tic20-Venus-FlagO [auth W]532Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: TIC20CHLRE_08g379650v5CHLREDRAFT_33679
Membrane Entity: Yes 
UniProt
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Small Molecules
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
TPO
Query on TPO
A
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
SEP
Query on SEP
B
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.3.0

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-30
    Type: Initial release
  • Version 1.1: 2022-12-07
    Changes: Database references
  • Version 1.2: 2022-12-21
    Changes: Database references