Annotations: 7VCF

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth H]	PF02325	CCB3/YggT (CCB3_YggT)	CCB3/YggT	-	Family
B	PF01103	Omp85 superfamily domain (Omp85)	Omp85 superfamily domain	The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ...	The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.	Domain
N [auth T]	PF02493	MORN repeat (MORN)	MORN repeat	-	Repeat
M [auth Q]	PF14237	GYF domain 2 (GYF_2)	GYF domain 2	This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. It contains an evolutionary conserved signature W-X-Y-X6-11-GPF-X4-M-X2-W-X3-GYF, the site of interaction with proline-rich peptides. Family memb ...	This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. It contains an evolutionary conserved signature W-X-Y-X6-11-GPF-X4-M-X2-W-X3-GYF, the site of interaction with proline-rich peptides. Family members include RME-8 (Required for receptor-mediated endocytosis 8), a DNAJC13 protein. RME-8 was first identified as a protein that is required for endocytosis in Caenorhabditis elegans. It coordinates the activity of the WASH complex with the function of the retromer SNX dimer to control endosomal tubulation [1]. Family members found in Arabidopsis include Arabidopsis trithorax-related3 (Atxr3), also known as set domain group 2 (Sdg2). It is the major enzyme responsible for H3K4me3 in Arabidopsis and SDG2-dependent H3K4m3 is critical for regulating gene expression and plant development [2]. Another family member found in Arabidopsis is Tic56. It is an essential subunit of a 1-MDa protein complex at the inner chloroplast envelope membrane [3]. Furthermore, Tic56 is important for rRNA processing and chloroplast ribosome assembly [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth K]	Toc10	-	-	-
H [auth I]	Toc39	-	-	-
G [auth H]	YlmG	-	chloroplast fission cellular component organization organelle organization plastid organization chloroplast organization organelle fission cellular process cellular component organization or biogenesis plastid fission	cellular anatomical structure membrane
F [auth G]	Toc34	hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope organelle outer membrane intracellular membrane-bounded organelle plastid outer membrane chloroplast outer membrane intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope organelle outer membrane intracellular membrane-bounded organelle plastid outer membrane chloroplast outer membrane intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle chloroplast membrane organelle outer membrane cytoplasm organelle membrane plastid envelope chloroplast
E [auth F]	Toc120	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope organelle outer membrane intracellular membrane-bounded organelle plastid outer membrane chloroplast outer membrane intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope organelle outer membrane intracellular membrane-bounded organelle plastid outer membrane chloroplast outer membrane intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle chloroplast membrane organelle outer membrane cytoplasm organelle membrane plastid envelope chloroplast
D	Tic13	-	-	-
C	Toc52	-	-	-
B	Toc75	-	-	membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope organelle outer membrane intracellular membrane-bounded organelle plastid outer membrane chloroplast outer membrane intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope organelle outer membrane intracellular membrane-bounded organelle plastid outer membrane chloroplast outer membrane intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle chloroplast membrane organelle outer membrane cytoplasm organelle membrane plastid envelope chloroplast
O [auth W]	Tic20-Venus-Flag	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity	establishment of protein localization nitrogen compound transport transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma establishment of protein localization nitrogen compound transport transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process intracellular protein localization	membrane-bounded organelle plastid membrane intracellular anatomical structure organelle inner membrane plastid membrane chloroplast envelope intracellular membrane-bounded organelle plastid inner membrane intracellular organelle organelle envelope cellular anatomical structure chloroplast membrane organelle membrane-bounded organelle plastid membrane intracellular anatomical structure organelle inner membrane plastid membrane chloroplast envelope intracellular membrane-bounded organelle plastid inner membrane intracellular organelle organelle envelope cellular anatomical structure chloroplast membrane organelle chloroplast inner membrane cytoplasm organelle membrane plastid envelope chloroplast
N [auth T]	Tic100	-	-	cellular anatomical structure membrane
M [auth Q]	Tic56	-	-	-
L [auth O]	Tic35	-	-	-
K [auth N]	Unknown fragment	-	-	-
J [auth M]	Tic12	-	-	-
A	Tic214	-	-	membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope intracellular membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure chloroplast membrane organelle cytoplasm organelle membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid membrane chloroplast envelope intracellular membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure chloroplast membrane organelle cytoplasm organelle membrane plastid envelope chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth H]	IPR003425	CCB3/YggT	Family
F [auth G]	IPR006703	AIG1-type guanine nucleotide-binding (G) domain	Domain
F [auth G]	IPR045058	GTPase GIMA/IAN/Toc	Family
F [auth G]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth F]	IPR006703	AIG1-type guanine nucleotide-binding (G) domain	Domain
E [auth F]	IPR045058	GTPase GIMA/IAN/Toc	Family
E [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B	IPR039910	Surface antigen D15-like	Family
B	IPR000184	Bacterial surface antigen (D15)	Domain
O [auth W]	IPR005691	Chloroplast protein import component Tic20	Family
N [auth T]	IPR003409	MORN repeat	Repeat
M [auth Q]	IPR037471	Protein TIC56	Family
M [auth Q]	IPR025640	GYF domain 2	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, E [auth F], F [auth G], O [auth W]	PDBTM	Annotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G [auth H]	TPO	Parent Component: THR RESID: AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047
E [auth F]	TPO	Parent Component: THR RESID: AA0038 , AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047
C	TPO	Parent Component: THR RESID: AA0038 , AA0038 , AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047
B	SEP	Parent Component: SER RESID: AA0038 , AA0038 , AA0038 , AA0037 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046
N [auth T]	SEP	Parent Component: SER RESID: AA0038 , AA0038 , AA0038 , AA0037 , AA0037 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046
N [auth T]	TPO	Parent Component: THR RESID: AA0038 , AA0038 , AA0038 , AA0037 , AA0037 , AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047
A	TPO	Parent Component: THR RESID: AA0038 , AA0038 , AA0038 , AA0037 , AA0037 , AA0038 , AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047 , O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.