7TZP

Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (FabG) from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 in Complex with NADH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (FabG) from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 in Complex with NADH.

Minasov, G.Shuvalova, L.Dubrovska, I.Kiryukhina, O.Satchell, K.J.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
3-oxoacyl-ACP reductase
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
247Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044Mutation(s): 0 
Gene Names: fabG_6DBX64_14690SAMEA4364603_02057
EC: 1.1.1.100
UniProt
Find proteins for A0A332H2K8 (Klebsiella pneumoniae)
Explore A0A332H2K8 
Go to UniProtKB:  A0A332H2K8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A332H2K8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAI (Subject of Investigation/LOI)
Query on NAI

Download Ideal Coordinates CCD File 
AA [auth C],
MA [auth E],
O [auth A],
WA [auth G]
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AB [auth G],
BA [auth C],
EB [auth H],
FA [auth D],
NA [auth E],
AB [auth G],
BA [auth C],
EB [auth H],
FA [auth D],
NA [auth E],
P [auth A],
Q [auth A],
R [auth A],
RA [auth F],
SA [auth F],
V [auth B],
W [auth B],
XA [auth G],
YA [auth G],
ZA [auth G]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
BB [auth G],
CA [auth C],
CB [auth G],
FB [auth H],
GA [auth D],
BB [auth G],
CA [auth C],
CB [auth G],
FB [auth H],
GA [auth D],
GB [auth H],
HA [auth D],
HB [auth H],
OA [auth E],
PA [auth E],
QA [auth E],
S [auth A],
T [auth A],
X [auth B],
Y [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
K
Query on K

Download Ideal Coordinates CCD File 
I [auth A],
IA [auth E],
TA [auth G],
U [auth B]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
DA [auth D],
DB [auth H],
EA [auth D],
J [auth A],
JA [auth E],
DA [auth D],
DB [auth H],
EA [auth D],
J [auth A],
JA [auth E],
K [auth A],
KA [auth E],
L [auth A],
LA [auth E],
M [auth A],
N [auth A],
UA [auth G],
VA [auth G],
Z [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 
  • Space Group: F 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 161.387α = 90
b = 256.02β = 90
c = 260.642γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-02
    Type: Initial release