Macromolecule Content

Total Structure Weight: 239.47 kDa
Atom Count: 16930
Residue Count: 2087
Unique protein chains: 1

6WN8

2.70 Angstrom Resolution Crystal Structure of Uracil Phosphoribosyl Transferase from Klebsiella pneumoniae

DOI: 10.2210/pdb6WN8/pdb

Classification: TRANSFERASE
Organism(s): Klebsiella pneumoniae subsp. pneumoniae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-04-22 Released: 2020-05-06
Deposition Author(s): Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.219
R-Value Work: 0.189
R-Value Observed: 0.190

wwPDB Validation3D Report Full Report

Literature

2.70 Angstrom Resolution Crystal Structure of Uracil Phosphoribosyl Transferase from Klebsiella pneumoniae

Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Uracil phosphoribosyltransferase	A, B, C, D, E, F, G, H, I, J	211	Klebsiella pneumoniae subsp. pneumoniae	Mutation(s): 0 Gene Names: upp, C4Y86_021390, C4Z38_007125, E3U37_17930, E3U38_17635, E9161_15415, E9167_16225, EJ893_03135, FAT88_15980, NCTC9504_02023... upp, C4Y86_021390, C4Z38_007125, E3U37_17930, E3U38_17635, E9161_15415, E9167_16225, EJ893_03135, FAT88_15980, NCTC9504_02023, RJA_06790 EC: 2.4.2.9
Find proteins for A0A1Y0PUH0 (Klebsiella pneumoniae subsp. pneumoniae) Go to UniProtKB: A0A1Y0PUH0
Protein Feature View Full Protein Feature View for A0A1Y0PUH0

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SUC Query on SUC Download CCD File	F	SUCROSE C₁₂ H₂₂ O₁₁ CZMRCDWAGMRECN-UGDNZRGBSA-N		Ligand Interaction
BDF Query on BDF Download CCD File	A, B, E	BETA-D-FRUCTOPYRANOSE C₆ H₁₂ O₆ LKDRXBCSQODPBY-ARQDHWQXSA-N		Ligand Interaction
SO4 Query on SO4 Download CCD File	A, B, C, D, E, F, G, H, I, J	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
CL Query on CL Download CCD File	A, B, C, D, E, F, G, I, J	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.219
R-Value Work: 0.189
R-Value Observed: 0.190
Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 203.349	α = 90
b = 203.349	β = 90
c = 157.775	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2020-04-22
Released Date: 2020-05-06

Deposition Author(s):

Satchell, K.J.F.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

Version 1.0: 2020-05-06
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.