7TWD

Structure of AAGAB C-terminal dimerization domain

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2022-02-07 Released: 2023-01-18 
  • Deposition Author(s): Tian, Y., Yin, Q.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


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Literature

Oligomer-to-monomer transition underlies the chaperone function of AAGAB in AP1/AP2 assembly.

Tian, Y.Datta, I.Yang, R.Wan, C.Wang, B.Crisman, L.He, H.Brautigam, C.A.Li, S.Shen, J.Yin, Q.

(2023) Proc Natl Acad Sci U S A 120: e2205199120-e2205199120

  • DOI: https://doi.org/10.1073/pnas.2205199120
  • Primary Citation of Related Structures:  
    7TWD

  • PubMed Abstract: 

    Assembly of protein complexes is facilitated by assembly chaperones. Alpha and gamma adaptin-binding protein (AAGAB) is a chaperone governing the assembly of the heterotetrameric adaptor complexes 1 and 2 (AP1 and AP2) involved in clathrin-mediated membrane trafficking. Here, we found that before AP1/2 binding, AAGAB exists as a homodimer. AAGAB dimerization is mediated by its C-terminal domain (CTD), which is critical for AAGAB stability and is missing in mutant proteins found in patients with the skin disease punctate palmoplantar keratoderma type 1 (PPKP1). We solved the crystal structure of the dimerization-mediating CTD, revealing an antiparallel dimer of bent helices. Interestingly, AAGAB uses the same CTD to recognize and stabilize the γ subunit in the AP1 complex and the α subunit in the AP2 complex, forming binary complexes containing only one copy of AAGAB. These findings demonstrate a dual role of CTD in stabilizing resting AAGAB and binding to substrates, providing a molecular explanation for disease-causing AAGAB mutations. The oligomerization state transition mechanism may also underlie the functions of other assembly chaperones.


  • Organizational Affiliation

    Department of Biological Science and Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha- and gamma-adaptin-binding protein p34
A, B
45Homo sapiensMutation(s): 0 
Gene Names: AAGAB
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PD74 (Homo sapiens)
Explore Q6PD74 
Go to UniProtKB:  Q6PD74
PHAROS:  Q6PD74
GTEx:  ENSG00000103591 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6PD74
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.217 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.539α = 90
b = 47.539β = 90
c = 191.394γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM138685

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release