Macromolecule Content

Total Structure Weight: 134.86 kDa
Atom Count: 7,176
Modelled Residue Count: 951
Deposited Residue Count: 1,152
Unique protein chains: 2

7T7T

Structure of TSK/BRU1 bound to histone H3.1

PDB DOI: https://doi.org/10.2210/pdb7T7T/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Citrus unshiu, Arabidopsis thaliana
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-12-15 Released: 2022-03-30
Deposition Author(s): Davarinejad, H., Couture, J.F.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å
R-Value Free: 0.318
R-Value Work: 0.279
R-Value Observed: 0.282

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication.

Davarinejad, H., Huang, Y.C., Mermaz, B., LeBlanc, C., Poulet, A., Thomson, G., Joly, V., Munoz, M., Arvanitis-Vigneault, A., Valsakumar, D., Villarino, G., Ross, A., Rotstein, B.H., Alarcon, E.I., Brunzelle, J.S., Voigt, P., Dong, J., Couture, J.F., Jacob, Y.

(2022) Science 375: 1281-1286

PubMed: 35298257 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1126/science.abm5320
Primary Citation of Related Structures:
7T7T

PubMed Abstract:

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein TONSOKU	A, B	531	Citrus unshiu	Mutation(s): 0 Gene Names: CUMW_187040, TSK
UniProt
Find proteins for A0A2H5Q1B8 (Citrus unshiu) Explore A0A2H5Q1B8 Go to UniProtKB: A0A2H5Q1B8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2H5Q1B8
Protein Feature View Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H3.1	C [auth X], D [auth W]	45	Arabidopsis thaliana	Mutation(s): 0 Gene Names: HTR2, At1g09200, T12M4.9, HTR3, At3g27360, K1G2.8, HTR13, At5g10390, F12B17_260, HTR9... HTR2, At1g09200, T12M4.9, HTR3, At3g27360, K1G2.8, HTR13, At5g10390, F12B17_260, HTR9, At5g10400, F12B17_250, HTR1, At5g65360, MNA5.9
UniProt
Find proteins for P59226 (Arabidopsis thaliana) Explore P59226 Go to UniProtKB: P59226
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P59226
Protein Feature View Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å
R-Value Free: 0.318
R-Value Work: 0.279
R-Value Observed: 0.282
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.89	α = 90
b = 92.33	β = 90
c = 209.91	γ = 90

Software Package:

Software Name	Purpose
SHELXDE	phasing
HKL-2000	data scaling
HKL-2000	data reduction
PHENIX	refinement
Coot	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-03-30

Deposition Author(s):

Davarinejad, H.

Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	--

Revision History (Full details and data files)

Version 1.0: 2022-03-30
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.