Download MendeleyCrystal structure of Burkholderia glumae toxoflavin biosynthesis protein ToxD
Fenwick, M.K., Begley, T.P., Ealick, S.E., Philmus, B.To be published.
7SPQ
Crystal structure of Burkholderia glumae toxoflavin biosynthesis protein ToxD
- PDB DOI: https://doi.org/10.2210/pdb7SPQ/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Burkholderia glumae BGR1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2021-11-03 Released: 2023-05-10
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK), Robert A. Welch Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.167
- R-Value Work: 0.135
- R-Value Observed: 0.137
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Serine/threonine kinase ToxD | 328 | Burkholderia glumae BGR1 | Mutation(s): 0 Gene Names: bglu_2g06430 |  | |
UniProt | |||||
Find proteins for C5AMM8 (Burkholderia glumae (strain BGR1)) Explore C5AMM8 Go to UniProtKB: C5AMM8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C5AMM8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 1PE Query on 1PE | F [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N |  | ||
| PG4 Query on PG4 | E [auth A], G [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| CIT Query on CIT | B [auth A], D [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.167
- R-Value Work: 0.135
- R-Value Observed: 0.137
- Space Group: I 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 135.978 | α = 90 |
| b = 135.978 | β = 90 |
| c = 135.978 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELXCD | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-10 Deposition Author(s): Fenwick, M.K., Philmus, B., Ealick, S.E.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM103403 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM103485 |
| National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | DK067081 |
| Robert A. Welch Foundation | United States | A0034 |
Revision History (Full details and data files)
- Version 1.0: 2023-05-10
Type: Initial release - Version 1.1: 2024-04-03
Changes: Data collection, Refinement description
