7SEK

Solution structure of the zinc finger domain of murine MetAP1, complexed with ZNG N-terminal peptide


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Zn-regulated GTPase metalloprotein activator 1 modulates vertebrate zinc homeostasis.

Weiss, A.Murdoch, C.C.Edmonds, K.A.Jordan, M.R.Monteith, A.J.Perera, Y.R.Rodriguez Nassif, A.M.Petoletti, A.M.Beavers, W.N.Munneke, M.J.Drury, S.L.Krystofiak, E.S.Thalluri, K.Wu, H.Kruse, A.R.S.DiMarchi, R.D.Caprioli, R.M.Spraggins, J.M.Chazin, W.J.Giedroc, D.P.Skaar, E.P.

(2022) Cell 185: 2148

  • DOI: https://doi.org/10.1016/j.cell.2022.04.011
  • Primary Citation of Related Structures:  
    7SEK

  • PubMed Abstract: 

    Zinc (Zn) is an essential micronutrient and cofactor for up to 10% of proteins in living organisms. During Zn limitation, specialized enzymes called metallochaperones are predicted to allocate Zn to specific metalloproteins. This function has been putatively assigned to G3E GTPase COG0523 proteins, yet no Zn metallochaperone has been experimentally identified in any organism. Here, we functionally characterize a family of COG0523 proteins that is conserved across vertebrates. We identify Zn metalloprotease methionine aminopeptidase 1 (METAP1) as a COG0523 client, leading to the redesignation of this group of COG0523 proteins as the Zn-regulated GTPase metalloprotein activator (ZNG1) family. Using biochemical, structural, genetic, and pharmacological approaches across evolutionarily divergent models, including zebrafish and mice, we demonstrate a critical role for ZNG1 proteins in regulating cellular Zn homeostasis. Collectively, these data reveal the existence of a family of Zn metallochaperones and assign ZNG1 an important role for intracellular Zn trafficking.


  • Organizational Affiliation

    Department of Pathology, Microbiology, and Immunology, Vanderbilt Institute for Infection, Immunology and Inflammation, Vanderbilt University Medical Center, Nashville, TN 37232, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
COBW domain-containing protein 1,Methionine aminopeptidase 1 fusion80Mus musculusMutation(s): 0 
Gene Names: Cbwd1Metap1
EC: 3.4.11.18
UniProt
Find proteins for Q8VEH6 (Mus musculus)
Explore Q8VEH6 
Go to UniProtKB:  Q8VEH6
Find proteins for Q8BP48 (Mus musculus)
Explore Q8BP48 
Go to UniProtKB:  Q8BP48
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ8VEH6Q8BP48
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B [auth A],
C [auth A]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM118157
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI101171
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM109825
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM131994

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-01
    Type: Initial release
  • Version 1.1: 2022-06-22
    Changes: Database references