7S6L

J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (conformation 3)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insights of a highly potent pan-neutralizing SARS-CoV-2 human monoclonal antibody

Torres, J.L.Ozorowski, G.Andreano, E.Liu, H.Copps, J.Piccini, G.Donnici, L.Conti, M.Planchais, C.Planas, D.Manganaro, N.Pantano, E.Paciello, I.Pileri, P.Bruel, T.Montomoli, E.Bouquet, H.Schwartz, O.Sala, C.De Francesco, R.Wilson, I.A.Rappuoli, R.Ward, A.B.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Spike glycoproteinA,
D [auth B],
E [auth C]
1280Severe acute respiratory syndrome coronavirus 2Mutation(s): 11 
Gene Names: S2
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC2 
Go to UniProtKB:  P0DTC2
Entity Groups  
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UniProt GroupP0DTC2
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
J08 fragment antigen binding heavy chain variable domainB [auth H]127Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
J08 fragment antigen binding light chain variable domainC [auth L]105Homo sapiensMutation(s): 0 
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
F [auth D],
G [auth E],
H [auth F],
I [auth G],
J [auth I],
F [auth D],
G [auth E],
H [auth F],
I [auth G],
J [auth I],
K [auth J],
L [auth K]
2N/AN-Glycosylation Oligosaccharides Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Bill & Melinda Gates FoundationItalyOPP1170236
Bill & Melinda Gates FoundationItalyINV-004923

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release