Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 5-mer - A3B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 5-mer - A3B2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 455.71 kDa 
• Atom Count: 24755 
• Modelled Residue Count: 3117 
• Deposited Residue Count: 4072 
• Unique protein chains: 3

7S6L

J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (conformation 3)

• PDB DOI: 10.2210/pdb7S6L/pdb
• EM Map EMD-24879:EMDBEMDataResource

• Classification: VIRAL PROTEIN/Immune System
• Organism(s): Severe acute respiratory syndrome coronavirus 2, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 2021-09-14 Released: 2022-05-11 
• Deposition Author(s): Ozorowski, G., Torres, J.L., Ward, A.B.
• Funding Organization(s): Bill & Melinda Gates Foundation

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural insights of a highly potent pan-neutralizing SARS-CoV-2 human monoclonal antibody

Torres, J.L., Ozorowski, G., Andreano, E., Liu, H., Copps, J., Piccini, G., Donnici, L., Conti, M., Planchais, C., Planas, D., Manganaro, N., Pantano, E., Paciello, I., Pileri, P., Bruel, T., Montomoli, E., Bouquet, H., Schwartz, O., Sala, C., De Francesco, R., Wilson, I.A., Rappuoli, R., Ward, A.B.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, D [auth B], E [auth C]	1280	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 11  Gene Names: S, 2
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
J08 fragment antigen binding heavy chain variable domain	B [auth H]	127	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
J08 fragment antigen binding light chain variable domain	C [auth L]	105	Homo sapiens	Mutation(s): 0

Oligosaccharides

Help

Entity ID: 4
Molecule	Chains	Chain Length	2D Diagram	Glycosylation
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F [auth D], G [auth E], H [auth F], I [auth G], J [auth I], K [auth J], L [auth K]	2	N/A	N-Glycosylation

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	AA [auth C], BA [auth C], M [auth A], N [auth A], O [auth A], P [auth A], Q [auth A], R [auth A], S [auth A], T [auth B], U [auth B], V [auth B], W [auth B], X [auth B], Y [auth C], Z [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2021-09-14 
• Released Date: 2022-05-11 
Deposition Author(s): Ozorowski, G., Torres, J.L., Ward, A.B.

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Funding Organization	Location	Grant Number
Bill & Melinda Gates Foundation	Italy	OPP1170236
Bill & Melinda Gates Foundation	Italy	INV-004923

Revision History  

• Version 1.0: 2022-05-11
  Type: Initial release